Gene detail

Detail information of GWHGAAEX000902/evm.TU.scaffold_102.39

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|110835353\|ref\|YP_694212.1\|	4.00E-10	acyltransferase [Alcanivorax borkumensis SK2]
KOG	KOG1505	7.00E-167	Lysophosphatidic acid acyltransferase LPAAT and related acyltransferases
nr	gi\|695079658\|ref\|XP_009387255.1\|	0	PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase PLS1-like isoform X2 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q41745\|LPAT_MAIZE	0	1-acyl-sn-glycerol-3-phosphate acyltransferase PLS1
trEMBL	tr\|I1L9X2\|I1L9X2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G12560.1}
TAIR	AT1G51260	7.00E-167	lysophosphatidyl acyltransferase 3

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000108	2313651	2324318	-

Transcript Sequence
>GWHTAAEX000902 CAGCAAAATGAAAACTTGGAAAGAAAACGATAATTTGAGATTAGAGCAAAGCTACCCTAGAAAACCTCAAGCCATAGCTTGGGATGGCCACTCATCAGGCAACTCTCTCTTGCCTGTTGCAAATCGCCTCTCGCCACAGAAAATATTTAAGTTGCTATAAATTTGTGGTTTAGGTGCCCCACTGGTGTGCACTCGATCGTCTGTATATCGAGCGGGCGTGATTCTGTCTATCTGGACCTCCCAACCCCGCCTTCCACCACCCACCATGAAACGCGGCCAACCAAAGCGCTGCGGTCATTAATATTCCGTTGAAGTAGATCGAAAAAAGGAAAGAAAAAGAAAAGTCTTTCCTGCTTATCGTCACGAAAAATCTAGTGCTTCCTGAAACTCAGAAGCACCCATTCGAATTCATCAGCCTTCTTCTTGACCCATGACGATTCCAGCGGCCGCAGTTGTGGTTCCTATAGGCGTTCTTTTCCTCCTTTCGGGGTTGATCGTGAACATCCTTCAGGCTACTTGCTACGTTACCGTTCGACCGCTATCCAAGAGCATGTACAGGAGGATCAACAGGGTATTAGTTGAATTGCTCTGGCTTCAACTTGTTTGGCTTGTTGATTGGTGGGCAGGAGTCGAGATTTGCTTATATGCAGATTCTGAATCATTTGAGTTAATGGGCAAAGAACATGCACTTGTGGTCTCTAATCATAAAAGTGACATTGATTGGCTTGTTGGATGGATTTTAGCACAGCGTTCAGGTTGCCTTGGTAGCTCATTAGCTGTCATGAAGAAGTCATCAAAGTTTCTTCCCGTCATTGGCTGGTCAATGTGGTTTACCGAATATCTGTTTTTGGAGAGAAGTTGGGCCAAGGATGAGGATACATTGAAGTCAGGTCTTCAAAGATTGGAGGACTTCCCTAAGCCATTTTGGCTGGCACTTTTTGTTGAAGGTACCCGTTTCACTCCAGCTAAACTTTTGGCAGCTCAAGAATACGCAGCCTCACAGGGTTTACCAGTTCCAAGAAATGTGTTGATTCCCCGTACTAAGGGATTTGTTTCAGCTGTAAATAATATGAGAACATTTGTTCCTGCCATTTATGACATGACTGTTGCAATTCCTAAAGACAAACCTTCTCCGACAATGCTCAGAATTTTGAAAGGACAGTCTTGTTTGGTTCACGTTCACATGAAGCGACGGTCCATGAATGAGGTACCTAAGACAGATGAAGCTATAGCACAATGGAGTAGAGACATATTCATCGAAAAGGATTCTTTACTTGACAAACACCTTTCTCAAGGCACTTTTGGCGATGAGGATTATAAACCCATTGGCCGGCCTATCAAGTCTTTACTTGTGGTTATTACTTGGACGGGTCTGCTATCAATTGCTGCCTTCTTGTTCTTCAGTTGGTCTGCTTTGATGTCCACATGGAAAGGGATAGCTTTTACGGCCTTTTCTCTGTTTCTGGTCACTTCTTGCATGCACGCTTTCATTGTGTTTTCCCAGTCGGAACGCTCAGCATCTGCCAGGGCCGCGCAATCAAGGGTTAAAAAATCATAGGCAGTTCAGATTTTTATCTACTGATTTATTTGAATTGATGAACCATTTGATATTTACCTACTTCCTTTAGCCTGAATATTTGGAGAAAATACAGTTTTGTGTATACCTATTGCACCTGAACATCTCGTACTTCCATATTATATATATAGTTAATTTCAAATCATTTTTTACAGTGTTCAATGCAACAAATCTAATCAATTACTTTCAATTGCAC

Network for GWHGAAEX000902

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01553.20	Acyltransferase	83	228	1.00E-15
PF16076.4	Acyltransf_C	239	312	3.00E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13523	AGPAT3_4	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Glycerolipid metabolism	map00561
		Glycerophospholipid metabolism	map00564
		Phospholipase D signaling pathway	map04072

Gene Ontology

GO term	Ontology	Name
GO:0016746	Molecular Function	transferase activity, transferring acyl groups

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	34.480
SRP064423	SRR2545915	Juvenile tuber	38.240
SRP108465	SRR5643513	five period of Gastrodia elata	48.620
	SRR5643514	five period of Gastrodia elata	47.290
	SRR5643515	five period of Gastrodia elata	45.670
	SRR5643524	five period of Gastrodia elata	49.950
	SRR5643525	five period of Gastrodia elata	52.740
	SRR5643528	five period of Gastrodia elata	50.370
	SRR5643658	five period of Gastrodia elata	52.910
	SRR5643659	five period of Gastrodia elata	37.500
	SRR5643660	five period of Gastrodia elata	36.380
	SRR5643661	five period of Gastrodia elata	38.210
	SRR5643662	five period of Gastrodia elata	32.900
	SRR5643663	five period of Gastrodia elata	33.980
	SRR5643664	five period of Gastrodia elata	30.410
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	40.830
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	48.330
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	44.750
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	43.480
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	45.470
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	47.030
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	46.420
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	45.820
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	56.790
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	50.600
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	56.190
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	56.190
SRP279888	Gastro	Gastrodia elata tuber	47.97
	Juven	Juvenile tuber	78.60
	Mother_Gastro	Mother tuber of Gastrodia elata	74.03
	Mother_Juven	Mother tuber of Juvenile	76.68