Detail information of GWHGAAEX000904/evm.TU.scaffold_102.48
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|473828000|ref|YP_007681283.1| | 4.00E-06 | channel protein (hemolysin III family protein) [Thalassolituus oleivorans MIL-1] |
| KOG | KOG0748 | 0 | Predicted membrane proteins, contain hemolysin III domain |
| nr | gi|695016236|ref|XP_009395019.1| | 0 | PREDICTED: heptahelical transmembrane protein ADIPOR3-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9SZG0|HHP4_ARATH | 0 | Heptahelical transmembrane protein 4 |
| trEMBL | tr|M0SK49|M0SK49_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P01320_001} |
| TAIR | AT4G37680 | 0 | heptahelical protein 4 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000108 | 2557086 | 2560359 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000904
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03006.19 | HlyIII | 82 | 375 | 1.70E-63 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K07297 | ADIPOR | AMPK signaling pathway | map04152 |
| Adipocytokine signaling pathway | map04920 | ||
| Longevity regulating pathway | map04211 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 33.640 |
| SRR2545915 | Juvenile tuber | 31.250 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 61.150 |
| SRR5643514 | five period of Gastrodia elata | 47.550 | |
| SRR5643515 | five period of Gastrodia elata | 55.830 | |
| SRR5643524 | five period of Gastrodia elata | 50.300 | |
| SRR5643525 | five period of Gastrodia elata | 80.500 | |
| SRR5643528 | five period of Gastrodia elata | 68.730 | |
| SRR5643658 | five period of Gastrodia elata | 79.040 | |
| SRR5643659 | five period of Gastrodia elata | 50.230 | |
| SRR5643660 | five period of Gastrodia elata | 55.800 | |
| SRR5643661 | five period of Gastrodia elata | 63.410 | |
| SRR5643662 | five period of Gastrodia elata | 61.920 | |
| SRR5643663 | five period of Gastrodia elata | 56.070 | |
| SRR5643664 | five period of Gastrodia elata | 57.320 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 55.120 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 58.650 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 48.400 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 64.060 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 86.710 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 114.720 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 64.580 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 79.410 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 48.110 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 51.790 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 51.640 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 51.640 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 47.72 |
| Juven | Juvenile tuber | 69.76 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 173.84 | |
| Mother_Juven | Mother tuber of Juvenile | 105.86 |