Gene detail

Detail information of GWHGAAEX000905/evm.TU.scaffold_102.50

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|51245497\|ref\|YP_065381.1\|	6.00E-11	peptidyl-prolyl cis-trans isomerase [Desulfotalea psychrophila LSv54]
KOG	KOG0543	5.00E-155	FKBP-type peptidyl-prolyl cis-trans isomerase
nr	gi\|743836614\|ref\|XP_010936157.1\|	0	PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q9FJL3\|FKB65_ARATH	1.00E-155	Peptidyl-prolyl cis-trans isomerase FKBP65
trEMBL	tr\|M0TMP6\|M0TMP6_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P04930_001}
TAIR	AT5G48570	5.00E-155	FKBP-type peptidyl-prolyl cis-trans isomerase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000108	2629206	2692836	-

Transcript Sequence
>GWHTAAEX000905 ATGAATCGGTCGAGAATCACTTTTTCATCGGCGGCCGCAGCGCGTGCGGCGATGGATTTCGACGACGACGACGAAGAAGAAGAGCCTGGCGAAGTACTTGAATCGGCTCCGCCTCTCCGCGTCGGTGAGGAGCGGGACGTTAACGCTTCTGGCCTCAAGAAGAAACTCCTCAAGGCCGGCTCCGGCTGGGGAACGCCTGTTTTCGAAGATGAAGTCACTGTTCACTACGAGGGATTATTGATCGATGGAGCGGTTTCTGATTCTGATAGGGATAAAGGGCAGCTTCTCACTTATAAGCTCGGGCAAGATGCGGTGGCCACAGGATTGGATCAGGGAATACTTACAATGAAAAAGGACGAACTTGCTTTGTTCACATTGCCTCCTATGAGACATGTGAATCCTGTTGCTCAGGCTCCTTTCACTGGTTCTGCTTGCCAGTTTAAAGTTGAGTTAGTATCATGGTTAACAATGGTTGACATATATAAAGATAATGGAATAGTGAAAAAGGTTTTGTCAAGTGGGGATAGCATGCTAACTGGAGATTTAGATGAAGTTACAGTAAGATATGAGCTAAGATTGCTTGATGGAACAGTAGTTGCAAAAACTTCAGAAGAAGGCTTGCTGTTTAGTGCTAGTCAAGAACATTTACTTCCGGCAATGCCAGTTGTCCTGAAGACCATGAAAAGGGGAGAGAAAGCTACAGTAACTATCAAACCACAATATGCATTCGGGCAGAAAGGAAGAGAAGCTGAAAATGGATTTCCTGCCATACCAACAAATTCTGAATTGATTCTTGACCTTGAGCTTCTAGCTCTGACGCCTATTGTTAATGTTACCGGTGATTTGAAGGTTTTGAAGAAGATTTTGAAAGTGGGTGAAGGTCTTCGTGGACCTAATGATGGGGAGGTTGTCCGGATTAGGTATACAGCCATGCTGGAAGGAGAAATTTTCGAGAGGAAGGGTTTTGGCGAGGATTTTTTTGAATTTGTTATAGATGAAGATCAAGTCATTCCTGGCCTAGATCGTGCAGTTGCAACAATGCTGAGGGGTGAATTTGCTCATGTGACAATAAAGCCTGAATATGGTTTTAAAAGTGAAGTCAGGAATGATGATCTTATGATTCCTGAAGATTCTACGTTACTCTATGAGGTGGAATTGGTAGATTTTACAAAGGAAAAGGAAACATATGAAATGACTGGCCATGAGATAATTGAAGCTGCTGAGAAGATGAAGAAAAAGGGCAATGAACTCTATAAGATTGGGAAATTTCATTGTGCTGCAAAAAAGTATGACAAGGCACTTAGCTATATTAATGAAGTTGAGCATTTTGAGGGTGAGAAAGAGAAGCTGGTCAGAACTTTAAGTTTCTCCTGCTGGCTAAATAATGCTGCATGCTGCCTTAAATTAAATGACTTTCATGGAGCCATCGCGTTATGTTCTAAGGTGCTCGACTTAGAATTTTGCAACACAAAAGCTTTGTATAGGAGGGCTCAGGCATACATTGAAACTGGTGATTTGATGTTGGCTGAATTGGATATCCAGAAAGCCCTGGAAGCTGATCCCCAGAATAGGGAGGTGAAGTCACTTCAAACAACGCTGAAACAGCTTCAGGCGGAAAGCAATAAGAGGAATGCTGAGATTTATGCCAACATGCTTGGACGAAAGAGAAAGGGTAATCATTGA

Network for GWHGAAEX000905

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00254.27	FKBP_C	69	151	1.50E-10
PF00254.27	FKBP_C	183	270	1.90E-15
PF00254.27	FKBP_C	298	387	7.00E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09571	FKBP4_5	Estrogen signaling pathway	map04915

Gene Ontology

GO term	Ontology	Name
GO:0003755	Molecular Function	peptidyl-prolyl cis-trans isomerase activity
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	15.220
SRP064423	SRR2545915	Juvenile tuber	11.750
SRP108465	SRR5643513	five period of Gastrodia elata	8.440
	SRR5643514	five period of Gastrodia elata	9.090
	SRR5643515	five period of Gastrodia elata	8.310
	SRR5643524	five period of Gastrodia elata	8.430
	SRR5643525	five period of Gastrodia elata	16.450
	SRR5643528	five period of Gastrodia elata	14.650
	SRR5643658	five period of Gastrodia elata	12.530
	SRR5643659	five period of Gastrodia elata	11.730
	SRR5643660	five period of Gastrodia elata	9.950
	SRR5643661	five period of Gastrodia elata	11.570
	SRR5643662	five period of Gastrodia elata	10.020
	SRR5643663	five period of Gastrodia elata	10.430
	SRR5643664	five period of Gastrodia elata	11.610
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	7.680
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	10.350
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	9.370
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	8.630
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	9.840
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	9.400
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	11.110
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	9.940
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	12.520
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	11.840
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	12.170
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	12.170
SRP279888	Gastro	Gastrodia elata tuber	13.39
	Juven	Juvenile tuber	8.71
	Mother_Gastro	Mother tuber of Gastrodia elata	9.21
	Mother_Juven	Mother tuber of Juvenile	6.73