Gene detail

Detail information of GWHGAAEX000906/evm.TU.scaffold_102.52

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2054	Nucleolar RNA-associated protein (NRAP)
nr	gi\|743836953\|ref\|XP_010936257.1\|	PREDICTED: nucleolar protein 6 [Elaeis guineensis]
trEMBL	tr\|W5FQN9\|W5FQN9_WHEAT	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Traes_5DL_160DE1CF7.2}
TAIR	AT1G63810	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000108	2733883	2766630	-

Transcript Sequence
>GWHTAAEX000906 TGAGATAATGTTGAATTTTGCAAAATCTTTTAGGCAATTATCATTAAGCATTTAACAACTCTAGGTAAAACCCTAATTCCTGCAATCTTTTCTTTTCTTGGTCCATCGTTCTTCTTCACGAAAAACAGACCACGGCTGCACCGAGCCACCGAGAGCAGGAGACGCCGACCAAACATTATCTTAGGAAGAAAGCTATGGTCCCCGAGTCCGTCACCGATTCCATGGATTTCAAAGTTGGAGAACTCCTGAAAGAGATTCAGCTCGATCCGTCTGCCACCAAATCTATCGGTCGAACCGTATCTTCCATTATAGATGTCATAAACAGTATCCCGGACCAGCAAACGGACTCAGAATGCGCTTCCGGCTTCCTACGGGATCTCTGCGTGCCCTCTGATAAGATTGCCTTCGTATTCAAAAAACCGGAAGCCATCCGGATTGGTGGCAGCTATGCTATCGGTTGCGTGGCAAAGCCTGAAGTAAACGTCGACCTACTAATCCGTATGCCCAAGGAATGCTTTCATGAGAAGGACTACTTGAACCACAGATATCATGCCAAGAGGTGTCTTTATCTGTGTGTTATTGAGAAGAGGCTAAAATCGTCTCCTTTGGCTCGGAAGATTGAATGGCGGACTTTGAGGAACGAGGCCAGGAAGCCCGTTATTCATTTGTATCCAGTTATCGACCATGCCGAGCTTTCTGAGTTTTTCGTACGGATAATACCTACAGCCTCTTCTGTGTTCACTGCCTCAAGATTGAGCATTTTGCGAAATAATGTTCGTGCATTTAATAAAGGTGACACTGTTAGAGCCACTCCACGCTACAACAACAGTATACTAGAAGATATGTTCATAGAAGAGAATGCAGACTTTGTGAAGAACGCTTTTAACGGTTGGAAAACTCTAGGGGATGCTTTGCTTTTACTTAAAGTTTGGGCTCGGAATAGAACTTCAATTTATACACATGATTGCTTAAATGGTTACTTGATATCTGTTATCCTGGCTTACCTAGCAGCCAGATCCGGAGGAAATCACATCAACAATTCAATGAAGGCCATGCAGATATTTCGTGTCACCTTGAAATTTATATCTTCAAATTTGTGGGCAAAGTGTCTTTTTCTGCAACCTTTAAATCAGTCTCAGCTGTCCGAGGAGGAGATGATTAATTGCCTCAAAGCATTTCCTGTTGTTCTATATGATGCAACTGGTCATACTAATTTGCTGTTCTGTATAAGCAGAACAGCTTTTGCAGAGCTTCAAGATGAGTCTACTTGGACAATTAATTGCATTGACAAATGCAGAGGGGGTGGATTTGAAGAGATTTTTATGACCAAGGTTGACTATGCTGCTAAATTTGATGCTTGCTTAAGATTAAACCTTAAAGGAAATTCTGTGGTCAATGCATCTGATTTTTGCTTGGATGATGAATGTTGGGGATTAGCTGAAAAGGATGTCTTGTCCGTGCTTCAACTAGGCCTGAATGATAGAGCAAAATTAGTCCGAGTAATTTGGTGGGGTGCTCCTTCAAATTGGAACATCAAAGAGGGTTATGAAAATTTTGGTGAAGAACCAATGCTTGTTGGCCTATTATTGAACTCTGAAGAGAAATGCTGCCGTGCTGTTGATATTGGTCCACATGCTGAAAATAGTGGGGAGGCTGCTAAATTTAGAAAATATTGGGGAGAAAAAGCAGAATTAAGACGCTTTAGGGACGGCACTGTTGCTGAAAGCACAGTATGGGAGTGTGCACCATGGCAGAGACACCTTATCGTGAAAAGAATTACCGAATATATTCTTTCTAAACATTTTCTTCTATCGCAAGAAGATCTTGTATTTGTCTTAGATCAACTTGATTTCACTCTTTATCTGGGTGACAAAGATCCTATAGCATCTTCTTCTAGTTTGTTGGAGGCATTCGAGACTTTGTCAAAGCGTTTACGCCATCTTGAAAATATACCTTTGAGAATATCAAGTGTACAGCCGCTGGAATCAGCTTTCAGGCACACAGCTGTCTTTCCTCCTGAACCTCATCCTCTTGCTTGTGAAAAAGGCCTTGCTAAAAAAACACTGAAATTTACTAATACTTGTATCAAACCGCTCACAGTTATGATTCAGTTGGAGGGATCTGGGAATTGGCCATTGGATGCTAAGATTATTGAGAAGACTAAGGTTTCTTTTCTCCTAAAAATTTGTGAAAGTCTTCAAGATCAATGGGGCATGCTTTGTAGTGCTGCGGAAGATGAAGTGAATGTTCTCTTGGAAGGATATGCTTTTAGCCTTAAAATTCTTCATGAGAGAAGCATGCACTTACTGAGAAACCAAAGTAAGGATATTATAAAAGATAAAAGATGTATAGACGAGGAGCTATTCTTTTGTAGTCAGCATGCTAGCATGATTAACGGCTTGCATGGTCGATACCCAACATATGGATCGGTTGTCAGATTAGCAAAGCGGTGGGTCTCTTCGCATTTGTTCTCTTCTTTTCTTGAAGAGGAGGCAGTTGAATTGATAGTTGCTTATCTCTTTTTGAGGCCATATCCCTTCCATGCTCCTTTGTCCCGTATCACAGGATTTTTGAGATTTTTGCGCTTAATAGCTAATTATGATTGGGACTTCTCTCCATTGATTATTGATATAAATGAAGATTTCACGCCCCAAGATGAATGGGAGATAAATGAAAACTTCTTGTCAAGCAGGAAGTCATCTGAAAAAGATGTACAGATTTTGAAACCAACAATGTTCTTAGCTACTACATATGACAAAAAATCTGAAGCATGGACAAAATATTTTCCTAATGGTGATGTCCTTCGAAGGATGGCGGCATATGCTCGAAGCAGTGCTGACTTGTTAACAAAACTGATTCTCCAACGCCAAAATGGCCCATTCACTTGGGAGCGTCTATTCCGTACACCGATGGATAACTACGATGCAGTTGTGGTTCTCCATCGGGATAAGCTCTCCTATCCCGAGCGCCTTCTTTTCCCTTGCATGATCAGTATTGGAAAACACATAATTCAGGGGAAAGCAAACCAAGACTTCGATCCTTTCATCCGTTTTGGTGGTTCTGTTCGAAGCTTTGAGGATGCGAGAAGCAAGCTGCTGGTGAACTTTGACCCGACCAATTTCTTCCTTGAAGATCTAAAGGAAAGGCTACCTGAAACTTTCAAGGTATGGTATGACTCGAATGGTGGCGATGCGGTCGGTCTGACATGGGATTTGAAGAAACGCAAGAGGGAGAATGATGATGAGACCGAGCTTATTAACATGCTTAAAGGCGTTGGAGAAGTGGGAAAGGGGTTTGTGAAGAGCGTGTATTTTCTCAAAGCGCCCAGGTGCTGAGAACTCTTGGGAGCTTCATTAGAATTTATTTATGAGGAGATATTAGGTGAGTAAGAAGAAAATATTTCAGCGGACTTTAATCTTCTTCAACTAATTGTTCTCTTAGTTTTTATATTTTGCTCTTTATTATTATTGAAATGAAAAAGTGATGATGAAGGCTATTAATCTTTAGAGGCTCTATGTATATGATGATTGTGAATTTGATAATTTTTTAGTAATTGAATTTATATTCTTTGATTCTTCCAACTATAGTTAAGTATTCCAAT

Network for GWHGAAEX000906

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03813.13	Nrap	97	230	1.80E-35
PF17403.1	Nrap_D2	237	379	2.40E-28
PF17404.1	Nrap_D3	384	537	3.20E-36
PF17405.1	Nrap_D4	564	737	2.70E-40
PF17406.1	Nrap_D5	740	902	3.20E-45
PF17407.1	Nrap_D6	907	1037	5.30E-11

Protein Sequence

>GWHPAAEX000906
MVPESVTDSMDFKVGELLKEIQLDPSATKSIGRTVSSIIDVINSIPDQQTDSECASGFLRDLCVPSDKIAFVFKKPEAIRIGGSYAIGCVAKPEVNVDLLIRMPKECFHEKDYLNHRYHAKRCLYLCVIEKRLKSSPLARKIEWRTLRNEARKPVIHLYPVIDHAELSEFFVRIIPTASSVFTASRLSILRNNVRAFNKGDTVRATPRYNNSILEDMFIEENADFVKNAFNGWKTLGDALLLLKVWARNRTSIYTHDCLNGYLISVILAYLAARSGGNHINNSMKAMQIFRVTLKFISSNLWAKCLFLQPLNQSQLSEEEMINCLKAFPVVLYDATGHTNLLFCISRTAFAELQDESTWTINCIDKCRGGGFEEIFMTKVDYAAKFDACLRLNLKGNSVVNASDFCLDDECWGLAEKDVLSVLQLGLNDRAKLVRVIWWGAPSNWNIKEGYENFGEEPMLVGLLLNSEEKCCRAVDIGPHAENSGEAAKFRKYWGEKAELRRFRDGTVAESTVWECAPWQRHLIVKRITEYILSKHFLLSQEDLVFVLDQLDFTLYLGDKDPIASSSSLLEAFETLSKRLRHLENIPLRISSVQPLESAFRHTAVFPPEPHPLACEKGLAKKTLKFTNTCIKPLTVMIQLEGSGNWPLDAKIIEKTKVSFLLKICESLQDQWGMLCSAAEDEVNVLLEGYAFSLKILHERSMHLLRNQSKDIIKDKRCIDEELFFCSQHASMINGLHGRYPTYGSVVRLAKRWVSSHLFSSFLEEEAVELIVAYLFLRPYPFHAPLSRITGFLRFLRLIANYDWDFSPLIIDINEDFTPQDEWEINENFLSSRKSSEKDVQILKPTMFLATTYDKKSEAWTKYFPNGDVLRRMAAYARSSADLLTKLILQRQNGPFTWERLFRTPMDNYDAVVVLHRDKLSYPERLLFPCMISIGKHIIQGKANQDFDPFIRFGGSVRSFEDARSKLLVNFDPTNFFLEDLKERLPETFKVWYDSNGGDAVGLTWDLKKRKRENDDETELINMLKGVGEVGKGFVKSVYFLKAPRC

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14544	UTP22, NOL6	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	48.500
SRP064423	SRR2545915	Juvenile tuber	50.520
SRP108465	SRR5643513	five period of Gastrodia elata	31.950
	SRR5643514	five period of Gastrodia elata	28.700
	SRR5643515	five period of Gastrodia elata	30.190
	SRR5643524	five period of Gastrodia elata	26.520
	SRR5643525	five period of Gastrodia elata	30.120
	SRR5643528	five period of Gastrodia elata	20.750
	SRR5643658	five period of Gastrodia elata	27.620
	SRR5643659	five period of Gastrodia elata	40.840
	SRR5643660	five period of Gastrodia elata	40.940
	SRR5643661	five period of Gastrodia elata	39.500
	SRR5643662	five period of Gastrodia elata	34.730
	SRR5643663	five period of Gastrodia elata	39.310
	SRR5643664	five period of Gastrodia elata	40.330
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	35.200
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	30.350
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	30.840
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	40.080
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	34.120
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	34.330
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	34.900
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	32.750
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	27.060
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	27.220
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	29.860
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	29.860
SRP279888	Gastro	Gastrodia elata tuber	39.29
	Juven	Juvenile tuber	42.66
	Mother_Gastro	Mother tuber of Gastrodia elata	25.33
	Mother_Juven	Mother tuber of Juvenile	28.42