Gene detail

Detail information of GWHGAAEX000907/evm.TU.scaffold_102.54

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743836906\|ref\|XP_010936243.1\|	1.01E-81	PREDICTED: transcription factor bHLH18-like isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q9T072\|BH025_ARATH	2.00E-44	Transcription factor bHLH25
trEMBL	tr\|M0TL96\|M0TL96_MUSAM	2.00E-76	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr7P27600_001}
TAIR	AT4G37850	2.00E-44	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000108	2846261	2848657	+

Transcript Sequence
>GWHTAAEX000907 GCTGTTAATTATTGAAATCCGAAATGAGGAGACAATCAAACGGGTACAATAATGCAGGTTGAAATTGATCCAAAATTAGGCCCAGCCTCTCAAATCAATGTAATCCCCAAATCATATTAAAAAATATATATATGTATAAAAAGGTTGAATATCACGGCAGCACAATGTGTATCGTTGAAAGGAACAGCTTGAAAGCTTTATATATCACAGATTGCTGCAAAAGCTTCCTTTTGAACAGGAAGCGGATTATTAGAACGAGGGAGGCTGCTCCAGCTTCTTCTTCTTCTTTTTCTTCTAATGAGAGGCCTTGCTTGTATGATTAAAGAAAGTTGAAGCTCTGCTTCTCAAAGTTGCAGAAAAAACGAAGAGGAAAAAGAGGCGAAGGGTTTCTGTTCATAGGTCTTCCATCCAAGTCTTTTAGAGTATCAGATCTTCCCAGATCTCAGAACAGATGACTAATCTGTCCATCGCCATTGAACCGCAGGCAGCAGAAACACGCTGGCTTTCAGACATTGGGATAGCCGGGCCTAATTACCAGCAATGGGAAATCAGCTCTTTGGATCAACTCATATCTCCCAACATGTGGGAAGATGGGATTCATCAAACCCTGTCTTCTGAAAGCCAGTCCTTGAATCCAGCAGCAAGCTTTACGTCGAACACCTTCAGCAGCAGCTCATCCATAGACTCCTCCCAAGCTGCCGTCGAGCACAAGCCTCTCCTTCCTCCCACAGCCTCTTCGCCCAGCATTCTCTCCTTCGGCAGGCCGGACTCTCCCTGCGACAGCTCCGAGCTTTACAAGAATCTGGTAATGGCCGCTGTGACTAACCCCCCGGAGGATGGGGCTTCAAAGAGAGGAGGGTCGCAAGGGAAGCGGAAGGCCACTGCTTCTTCTTCGCATAACCAAGATCATATATTGGCAGAGAGGAAGCGCAGGGAGAAGCTCAGCCAGAGATTCATCGCTCTCTCCGCCATTGTTCCTGATCTTAAAAAGATGGACAAAGCTTCAGTGCTGGGCGATGCAATAAAGTATCTGAAGGCGTTGCAGGAAAAGGTAAAGGCGCTTGAGGAGCAGGCGACCAAGACGACGGTGGAATCAGCCGTCCTCGTTAAAAACGAAGGCGGGAACATCACCTGCTCAGATAAAATAGAGGTGAAATTGGCGGACAAGACGGTTCTGATAAAAATCCACTGCGAGAGCAAAAAGGGGGTTTTGGCCAGAGCTCTGGTGGAGATTGAAAAGCTGCAGCTTGGGGTCGTCAGCATAAACGCCGTGCCTTTTGCAGCTTCCTCTCTCGATATCACAGTCGTGGCTCAGGTAATAATGAATGCGAGTCCAGCAATTCTTACTCTTAGGCTTATTTAATGTGCTGTGGTTTCCAGGTTGAGGATGGGTTCTCCATGACAGTGAAGGATTTGGTGAGGAATTTGGGCTCTGTTTTTAGAGTGTTCATGTGAATCTGTTGTATTCTTCTTTTGAAAGCATCTCCTTCCTTTTTATTCTGCGTCGTGAGCTTGTTGCGAGCAATAGTTGTAGACTAGAGATTTTTAGAGTTGTTTTTTTCCTGAATCTTTTTGCTTTTTTTGTCCTTTTTTCATCAGCTTTTGAGGCTGTGAAGCTGGGGGCGGCTAATGTTTGGTAAAAAAAGTCAGTTTGTAACCAAACTTGTGAATTTTGCAAAGAGAAGATGTGTGCGTTTGAGGCTCAGAAATATATCGCATACAATGCCAAATTATTTTGAGATTTGCTGCACATAAGTTTAAAATTAGGCAAATTTATTCATGATTTATCAATAAAAATGGATTATATAATAACTATTT

Network for GWHGAAEX000907

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.25	HLH	152	198	1.00E-09

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	Molecular Function	protein dimerization activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	29.680
SRP064423	SRR2545915	Juvenile tuber	37.220
SRP108465	SRR5643513	five period of Gastrodia elata	35.540
	SRR5643514	five period of Gastrodia elata	22.310
	SRR5643515	five period of Gastrodia elata	14.690
	SRR5643524	five period of Gastrodia elata	20.290
	SRR5643525	five period of Gastrodia elata	2.070
	SRR5643528	five period of Gastrodia elata	0.800
	SRR5643658	five period of Gastrodia elata	1.700
	SRR5643659	five period of Gastrodia elata	40.950
	SRR5643660	five period of Gastrodia elata	29.270
	SRR5643661	five period of Gastrodia elata	29.780
	SRR5643662	five period of Gastrodia elata	10.810
	SRR5643663	five period of Gastrodia elata	6.640
	SRR5643664	five period of Gastrodia elata	9.070
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	21.710
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	37.060
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	24.970
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	21.710
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	14.900
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	10.990
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	32.390
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	19.940
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	28.850
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	24.460
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	39.210
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	39.210
SRP279888	Gastro	Gastrodia elata tuber	8.19
	Juven	Juvenile tuber	39.70
	Mother_Gastro	Mother tuber of Gastrodia elata	6.44
	Mother_Juven	Mother tuber of Juvenile	17.63