Detail information of GWHGAAEX000917/evm.TU.scaffold_103.3


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|189502744|ref|YP_001958461.1|2.00E-11hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
KOGKOG46425.00E-116Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats)
nrgi|672111619|ref|XP_008801572.1|1.32E-135PREDICTED: E3 ubiquitin-protein ligase CHIP-like isoform X3 [Phoenix dactylifera]
Swissprottr|Q9SRS9|CHIP_ARATH2.00E-116E3 ubiquitin-protein ligase CHIP {ECO:0000305}
trEMBLtr|K7MFY9|K7MFY9_SOYBN5.00E-126Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G09930.6}
TAIRAT3G073705.00E-116carboxyl terminus of HSC70-interacting protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000001045645569546+
Transcript Sequence

Network for GWHGAAEX000917

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04564.14U-box2032752.00E-23
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
K09561STUB1, CHIP Protein processing in endoplasmic reticulum map04141
Ubiquitin mediated proteolysismap04120

Gene Ontology

GO term OntologyName
GO:0016567Biological Processprotein ubiquitination
GO:0004842Molecular Functionubiquitin-protein transferase activity
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms15.520
SRR2545915Juvenile tuber20.510
SRP108465SRR5643513five period of Gastrodia elata15.600
SRR5643514five period of Gastrodia elata13.750
SRR5643515five period of Gastrodia elata15.680
SRR5643524five period of Gastrodia elata14.910
SRR5643525five period of Gastrodia elata14.310
SRR5643528five period of Gastrodia elata13.060
SRR5643658five period of Gastrodia elata17.260
SRR5643659five period of Gastrodia elata11.610
SRR5643660five period of Gastrodia elata11.940
SRR5643661five period of Gastrodia elata14.200
SRR5643662five period of Gastrodia elata10.510
SRR5643663five period of Gastrodia elata13.290
SRR5643664five period of Gastrodia elata12.560
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_115.150
SRR6049655Rhizomagastrodiae_C368-T10_good_121.540
SRR6049656Rhizomagastrodiae_C368-T07_good_112.730
SRR6049657Rhizomagastrodiae_C368-T07_good_113.790
SRR6049658Rhizomagastrodiae_C368-T04_good_115.710
SRR6049659Rhizomagastrodiae_C368-T04_good_116.970
SRR6049660Rhizomagastrodiae_C368-T01_good_115.890
SRR6049661Rhizomagastrodiae_C368-T04_good_114.760
SRR6049662Rhizomagastrodiae_C368-T01_good_113.980
SRR6049663Rhizomagastrodiae_C368-T01_good_114.050
SRR6049664Rhizomagastrodiae_C368-T10_good_117.000
SRR6049665Rhizomagastrodiae_C368-T10_good_117.000
SRP279888GastroGastrodia elata tuber 18.30
JuvenJuvenile tuber19.59
Mother_GastroMother tuber of Gastrodia elata 28.50
Mother_JuvenMother tuber of Juvenile 24.14