Detail information of GWHGAAEX000919/evm.TU.scaffold_103.7
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|297622743|ref|YP_003704177.1| | 3.00E-15 | Kelch repeat-containing protein [Truepera radiovictrix DSM 17093] |
| KOG | KOG1072 | 1.00E-71 | FOG: Kelch repeat |
| nr | gi|743815426|ref|XP_010930338.1| | 6.23E-121 | PREDICTED: LOW QUALITY PROTEIN: F-box/kelch-repeat protein SKIP20-like [Elaeis guineensis] |
| Swissprot | tr|O80582|FBK46_ARATH | 3.00E-72 | F-box/kelch-repeat protein At2g44130 |
| trEMBL | tr|M0T4U3|M0T4U3_MUSAM | 1.00E-94 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P06940_001} |
| TAIR | AT2G44130 | 1.00E-71 | Galactose oxidase/kelch repeat superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000104 | 190713 | 192283 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000919
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00646.32 | F-box | 11 | 50 | 6.50E-07 |
| PF01344.24 | Kelch_1 | 121 | 162 | 3.10E-07 |
| PF01344.24 | Kelch_1 | 165 | 210 | 1.40E-14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 154.060 |
| SRR2545915 | Juvenile tuber | 83.100 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 200.410 |
| SRR5643514 | five period of Gastrodia elata | 128.910 | |
| SRR5643515 | five period of Gastrodia elata | 86.400 | |
| SRR5643524 | five period of Gastrodia elata | 93.140 | |
| SRR5643525 | five period of Gastrodia elata | 179.030 | |
| SRR5643528 | five period of Gastrodia elata | 101.590 | |
| SRR5643658 | five period of Gastrodia elata | 251.200 | |
| SRR5643659 | five period of Gastrodia elata | 22.040 | |
| SRR5643660 | five period of Gastrodia elata | 54.330 | |
| SRR5643661 | five period of Gastrodia elata | 21.800 | |
| SRR5643662 | five period of Gastrodia elata | 27.810 | |
| SRR5643663 | five period of Gastrodia elata | 15.080 | |
| SRR5643664 | five period of Gastrodia elata | 27.600 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 114.260 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 52.890 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 66.450 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 210.420 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 350.210 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 411.800 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 73.800 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 276.920 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 25.320 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 13.960 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 62.890 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 62.890 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 36.36 |
| Juven | Juvenile tuber | 33.58 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 427.74 | |
| Mother_Juven | Mother tuber of Juvenile | 176.73 |