Detail information of GWHGAAEX000923/evm.TU.scaffold_103.12
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|430761174|ref|YP_007217031.1| | 4.00E-63 | 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase [Thioalkalivibrio nitratireducens DSM 14787] |
| nr | gi|694446041|ref|XP_009349412.1| | 3.28E-136 | PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase [Pyrus x bretschneideri] |
| Swissprot | tr|O50044|KDSA_PEA | 2.00E-134 | 2-dehydro-3-deoxyphosphooctonate aldolase |
| trEMBL | tr|I1N447|I1N447_SOYBN | 1.00E-133 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G48370.1} |
| TAIR | AT1G79500 | 1.00E-127 | Aldolase-type TIM barrel family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000104 | 362166 | 368010 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000923
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00793.19 | DAHP_synth_1 | 78 | 225 | 3.60E-19 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01627 | kdsA | Metabolic pathways | map01100 |
| Lipopolysaccharide biosynthesis | map00540 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0009058 | Biological Process | biosynthetic process |
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.180 |
| SRR2545915 | Juvenile tuber | 0.100 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.480 |
| SRR5643514 | five period of Gastrodia elata | 0.070 | |
| SRR5643515 | five period of Gastrodia elata | 0.360 | |
| SRR5643524 | five period of Gastrodia elata | 0.080 | |
| SRR5643525 | five period of Gastrodia elata | 0.960 | |
| SRR5643528 | five period of Gastrodia elata | 1.650 | |
| SRR5643658 | five period of Gastrodia elata | 0.730 | |
| SRR5643659 | five period of Gastrodia elata | 0.240 | |
| SRR5643660 | five period of Gastrodia elata | 0.340 | |
| SRR5643661 | five period of Gastrodia elata | 0.090 | |
| SRR5643662 | five period of Gastrodia elata | 0.430 | |
| SRR5643663 | five period of Gastrodia elata | 0.460 | |
| SRR5643664 | five period of Gastrodia elata | 0.800 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.120 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.300 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.860 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.610 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.750 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.530 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.250 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.110 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.080 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.840 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.280 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.280 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.68 |
| Juven | Juvenile tuber | 0.22 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.11 | |
| Mother_Juven | Mother tuber of Juvenile | 0.18 |