Detail information of GWHGAAEX000924/evm.TU.scaffold_103.13
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|307151293|ref|YP_003886677.1| | 1.00E-68 | A/G-specific adenine glycosylase [Cyanothece sp. PCC 7822] |
| KOG | KOG2457 | 7.00E-120 | A/G-specific adenine DNA glycosylase |
| nr | gi|743815352|ref|XP_010930318.1| | 0 | PREDICTED: A/G-specific adenine DNA glycosylase [Elaeis guineensis] |
| Swissprot | tr|F4JRF4|MUTYH_ARATH | 2.00E-143 | A/G-specific adenine DNA glycosylase |
| trEMBL | tr|U5DD80|U5DD80_AMBTC | 0 | Uncharacterized protein {ECO:0000313|EMBL:ERN20170.1} |
| TAIR | AT4G12740 | 7.00E-120 | HhH-GPD base excision DNA repair family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000104 | 370066 | 373548 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000924
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00730.24 | HhH-GPD | 77 | 206 | 9.70E-19 |
| PF14815.5 | NUDIX_4 | 301 | 425 | 3.70E-14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03575 | mutY | Base excision repair | map03410 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006284 | Biological Process | base-excision repair |
| GO:0006281 | Biological Process | DNA repair |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0016787 | Molecular Function | hydrolase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.000 |
| SRR2545915 | Juvenile tuber | 0.000 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.040 |
| SRR5643514 | five period of Gastrodia elata | 0.090 | |
| SRR5643515 | five period of Gastrodia elata | 0.040 | |
| SRR5643524 | five period of Gastrodia elata | 0.000 | |
| SRR5643525 | five period of Gastrodia elata | 0.080 | |
| SRR5643528 | five period of Gastrodia elata | 0.040 | |
| SRR5643658 | five period of Gastrodia elata | 0.130 | |
| SRR5643659 | five period of Gastrodia elata | 0.000 | |
| SRR5643660 | five period of Gastrodia elata | 0.040 | |
| SRR5643661 | five period of Gastrodia elata | 0.000 | |
| SRR5643662 | five period of Gastrodia elata | 0.000 | |
| SRR5643663 | five period of Gastrodia elata | 0.000 | |
| SRR5643664 | five period of Gastrodia elata | 0.030 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.270 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.030 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.03 |
| Juven | Juvenile tuber | 0.00 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.05 | |
| Mother_Juven | Mother tuber of Juvenile | 0.02 |