Detail information of GWHGAAEX000925/evm.TU.scaffold_103.14


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|20807748|ref|NP_622919.1|1.00E-69rRNA methylase [Thermoanaerobacter tengcongensis MB4]
nrgi|743815339|ref|XP_010930315.1|5.30E-152PREDICTED: uncharacterized protein LOC105051524 [Elaeis guineensis]
trEMBLtr|M0TYH1|M0TYH1_MUSAM1.00E-151Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P08120_001}
TAIRAT3G254702.00E-124bacterial hemolysin-related

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000104392200418363-
Transcript Sequence

Network for GWHGAAEX000925

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01479.24S4611043.30E-09
PF01728.18FtsJ1162967.90E-19
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0032259Biological Processmethylation
GO:0003723Molecular FunctionRNA binding
GO:0008168Molecular Functionmethyltransferase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms14.360
SRR2545915Juvenile tuber7.250
SRP108465SRR5643513five period of Gastrodia elata5.910
SRR5643514five period of Gastrodia elata5.180
SRR5643515five period of Gastrodia elata4.710
SRR5643524five period of Gastrodia elata3.790
SRR5643525five period of Gastrodia elata3.590
SRR5643528five period of Gastrodia elata3.060
SRR5643658five period of Gastrodia elata2.430
SRR5643659five period of Gastrodia elata5.650
SRR5643660five period of Gastrodia elata5.610
SRR5643661five period of Gastrodia elata6.200
SRR5643662five period of Gastrodia elata5.830
SRR5643663five period of Gastrodia elata5.990
SRR5643664five period of Gastrodia elata3.730
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_13.010
SRR6049655Rhizomagastrodiae_C368-T10_good_15.120
SRR6049656Rhizomagastrodiae_C368-T07_good_14.880
SRR6049657Rhizomagastrodiae_C368-T07_good_15.020
SRR6049658Rhizomagastrodiae_C368-T04_good_13.450
SRR6049659Rhizomagastrodiae_C368-T04_good_14.850
SRR6049660Rhizomagastrodiae_C368-T01_good_14.980
SRR6049661Rhizomagastrodiae_C368-T04_good_13.130
SRR6049662Rhizomagastrodiae_C368-T01_good_15.710
SRR6049663Rhizomagastrodiae_C368-T01_good_13.210
SRR6049664Rhizomagastrodiae_C368-T10_good_16.230
SRR6049665Rhizomagastrodiae_C368-T10_good_16.230
SRP279888GastroGastrodia elata tuber 5.88
JuvenJuvenile tuber7.09
Mother_GastroMother tuber of Gastrodia elata 3.62
Mother_JuvenMother tuber of Juvenile 3.55