Detail information of GWHGAAEX000928/evm.TU.scaffold_103.17


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|41614998|ref|NP_963496.1|4.00E-18hypothetical protein NEQ203 [Nanoarchaeum equitans Kin4-M]
KOGKOG01851.00E-13420S proteasome, regulatory subunit beta type PSMB4/PRE4
nrgi|672180250|ref|XP_008810310.1|6.92E-148PREDICTED: proteasome subunit beta type-4-like [Phoenix dactylifera]
Swissprottr|Q7DLR9|PSB4_ARATH3.00E-135Proteasome subunit beta type-4 (Precursor)
trEMBLtr|W1PZ94|W1PZ94_AMBTC4.00E-143Proteasome subunit beta type {ECO:0000256|RuleBase:RU004203}
TAIRAT1G564501.00E-13420S proteasome beta subunit G1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000104480585498509-
Transcript Sequence

Network for GWHGAAEX000928

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00227.25Proteasome412241.50E-36
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02736PSMB4 Proteasome map03050

Gene Ontology

GO term OntologyName
GO:0051603Biological Processproteolysis involved in cellular protein catabolic process
GO:0004298Molecular Functionthreonine-type endopeptidase activity
GO:0004175Molecular Functionendopeptidase activity
GO:0005839Cellular Componentproteasome core complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms71.060
SRR2545915Juvenile tuber67.580
SRP108465SRR5643513five period of Gastrodia elata70.040
SRR5643514five period of Gastrodia elata85.900
SRR5643515five period of Gastrodia elata70.500
SRR5643524five period of Gastrodia elata84.920
SRR5643525five period of Gastrodia elata58.020
SRR5643528five period of Gastrodia elata79.130
SRR5643658five period of Gastrodia elata71.910
SRR5643659five period of Gastrodia elata50.060
SRR5643660five period of Gastrodia elata49.760
SRR5643661five period of Gastrodia elata52.790
SRR5643662five period of Gastrodia elata37.200
SRR5643663five period of Gastrodia elata48.980
SRR5643664five period of Gastrodia elata37.730
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_170.610
SRR6049655Rhizomagastrodiae_C368-T10_good_192.720
SRR6049656Rhizomagastrodiae_C368-T07_good_178.890
SRR6049657Rhizomagastrodiae_C368-T07_good_161.860
SRR6049658Rhizomagastrodiae_C368-T04_good_158.500
SRR6049659Rhizomagastrodiae_C368-T04_good_157.680
SRR6049660Rhizomagastrodiae_C368-T01_good_163.100
SRR6049661Rhizomagastrodiae_C368-T04_good_161.070
SRR6049662Rhizomagastrodiae_C368-T01_good_1100.890
SRR6049663Rhizomagastrodiae_C368-T01_good_181.790
SRR6049664Rhizomagastrodiae_C368-T10_good_1122.450
SRR6049665Rhizomagastrodiae_C368-T10_good_1122.450
SRP279888GastroGastrodia elata tuber 44.74
JuvenJuvenile tuber56.26
Mother_GastroMother tuber of Gastrodia elata 53.43
Mother_JuvenMother tuber of Juvenile 44.16