Gene detail

Detail information of GWHGAAEX000929/evm.TU.scaffold_103.18

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2063	Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3
nr	gi\|672111522\|ref\|XP_008801094.1\|	PREDICTED: transforming growth factor-beta receptor-associated protein 1 [Phoenix dactylifera]
trEMBL	tr\|M0SZ87\|M0SZ87_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P17080_001}
TAIR	AT1G22860	Vacuolar sorting protein 39

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000104	506235	532127	-

Transcript Sequence
>GWHTAAEX000929 TTGAGAGATAGTTTAGGGTACTTACATGAAACTCGTTAGGCGTCGGTCGTTGTACCGATTTTCATCTTCGATCGCAAACTTGCTATGACGCTCAAATCTGGTAAGGATCGTGCTGTCTTAGTAGCATTCACAGATTTCGATCCCGCCAAACTAGCCGGCTTCCCCCCTGCCGTTCCTCTCACAATCCGATCACTTGCTGTCGTCGCTGCATCGGATTCTCAAACCCTGATATACGTCGGAACCGGTGGTGGTAAACTCATTCTTCTCTCATTGAACCCCTCGCCGCAGTCGGCTTCACTTGCTTCTTCTGATGGAAACTCCAATTCTCACCCATCTCCGCCGGTACAGTTCCTTAGGGCTGCGACTATCAGCAACCGTGTCGTCGATTCAATTACTGTTCTTGCTGAGATTAGAAGAGTTATTCTTCACTCTGATGGATTATTGTTTTTGGTGGATTCGCTGCTATTGCAACCTGTGCAAAAGCTAGGATTCATCAAGGACGTTACAGCCATTTCTAAGCAGCTGGTACCGCGTGCATCGTTGATTTCGGATCCCTTTGGCGATGGCGTGGTGAAAACAGAACTTTCTAGACCCGGGCCAACTTTCCTTGAGAAGTTGGGAGGGGGTATTCTGGTAAATGGGACAGCTCCTAGGGTTTCCGAGTTGCAGAGAGGAGCGGGAACTGGTTGTTTTTTTGCTGCTGCAGCGGGCAAGAAATTGGTGTTAATTGAGTTTTTTTTTCCAAGCAATGTTGACTTGTATGGTGAACGTAGCGGCATTTCCATACTCTGGAAGGAGATTCAGGGGGTCGAAGGAGTTAAAACGATGGCCTGGGTAGGTGATTCTATAATAGCAGGAACGTCCGAGGGTTACCATCTTTTCTCTGGTGTTACCGGTAAAGGCTCATTAATATTTTCTCTTCCTGAATCATCTCCTCCTATGGTGAAATTTCTACTGCGAAGCTCCGATGTGCTTTTATTGTTTGATAATATTGGCGTAGTTTCTAATACACTGGGACAGCCAGTCGGTGGAAGTTTGATTTTCCATTACGTGCCGGAATGCATTGCAGAGATACGTCCTTATGTAATAGTTGCAAGGGATGGCAGGCTGGATCTGTATAGGAAGAAATCTGGGGATTGTGTTCAGTCATTGTCATTGACAAGTAGCAGTGTTGGTCCTTGCATTGTTGCTAATGATGATCAGGACACTGGAGAGATTGTTGTTGTTGGAACTACTTATAAGGTTTTCTGTTGTCGTAAAGTGTCTCCAGAAGAGCAAATCAAAGACTTGTTAAGAAAGAAGCATTTAAAGGAAGCCATCAGTTTGGTTGAAGAATTTGAGTCCGATGGTGAAATGACCAGGGAAATGCTCTTCTTTGTGCATGCTCAAATTGGTTTCCTATTGCTCTTTGAATTGCGTTTCAAAGAAGCAGTTGATCACTTTTTGCTATCAGAATCAATGGATCCATCTGAAATATTTTCATTTATAATAAAAGACCCCAACCGGTGGTCCCATCAGGTTCCAAGGAAACGTTACTGGGGATTGCATCCTCCTCCTGTACCTCTTGAACAAGTTGTTGATGATGGATTAATAGCTATTCAACGAGCTATGTTTCTCAGAAAAGCTGGTATTGTGACTTCTACTGACGAGGATTTTATTTTGAATCCACCAAGTAGAACTGATTTATTGCAGTCAGCAATTGAGAACATTATAAGGTATTTTCTTGTATGCCGGGAGAAGGAATTGATTCATCCAGTGAATGAAGGAGTTGACACTCTTTTAATGTACCTTTACAGAGCTCTTAATCGTGTACCAGATATGGAGGAGCTTGCATCATCTCAGAACAGCTGTGTTGTGGAGGAGTTAGAAACCTTGTTAGATGGCTCTGGACATTTACGGACACTTGCATTTCTGTATGCTAGTAAAGGAATGCTCTCAAAGGCTCTCACAATCTGGCGTGTTCTGGCAAAAAAATATTCAACTGGATTTTGGAAAGATATCACTGCTGATGCAGATTGTGACTACTCAGATTCATCTTCGAATTCACTCTCTGGTCAGAAAATAGCTGCTGCTGAAGCATCGAAGTTGCTACAAGAGTCATCTGATCAAGCTCTTATTCTTGAGCATATTGGATGGATTGCTGATATCGATCAAGAATGTGCCATCCTTATTTTAACTTCTGAGAAGCGGATTAAACAACTTTCTCCAGAAGAGGTGATTGCATCAATTGATCCAAAAAAAGTTGAAATTCATCAGAGATATTTGCGGTGGTTAATTGAAGATCAAGACTCAGATGATATGCACTTTCATACTTTGTATGCTCTTTCTCTTGCTAGATCAGCAATCGAATTGGTTGAAAGGGACTTTAAGCAGGGCAATCATCATTCTGAAATATTTAATGAGATCAGTGTATCTGAAGTTACAAATGAAAGTGCTCATATAAGTCATGTTAGGGAAAAACTGCAGTTATTTTTACAGGCTTCTGATATGTATGATCCCGAACTAGTGCTTAAGGTTGTGGGAGGATCAGAATTGTGGTTGGAAAAGGCAATCCTTTATCGAAAAATGGGATTGGAGGAATTGGTGCTTGAAATCCTAGCATTGAAATTGGAAGATTGTGAAGCTGCTGAGCAATATTGTGCGGAGATTGGTAGACAGGATGCTTATATGCAGTATGTTTTCATACTTGAATTTGATTTTCAGTTTTGTAATAATTGTTTATATGTTACCTGTCTGAGCATATTGTTTAGGCTGTTAGATATGTATTTGAATCCTCAAGATGGAAAGGGTACTATGTTTAAAGCTGCAGTTCGTCTCCTCCATACACATGGGGAGTCCTTGAATCCGTTGCAATTGTTGGAGAAACTGTCACCTGAGATGCCCCTCCAGCTTGCCTCTGATATAGTATTGAAAATTCTTAGAGCTCGAGTTCATCATCAACATCAAGAACAGATAGTTCACAATCTTTGGTGGGCTATGAGCCTGGATGCGCAGCTGGCAAGGCTGGAGGAGAGATCAAGAAATGTGCAGATAAATGATGAGAGCGTTTGTGATTCCTGCCGCGCCCGCCTCGGCACCAAGCTTTTTGCAATGTATCCGGATGATTCCATTGTTTGTTATAAGTGTTACCGCCGACTTGGAGAATCAACCTCTGCACGTGGGCGCAACTTTAGCGAAGATCCTATTTTCAAGCCCGGGTGGCTCGTCAGCAGATAGCAGCGCGTCAGATGATTTTCATGGCAGATGAGTTTTGGTTTGAATGCATGAACGGTAAACGTTATATATGTTGCAAAATTACTTTTTGGGTTAAATTTCATCCAAATACCACTCAAATATTCTTCATTTACGTTGCTAGCTCCTAAACTTTGATATATATATATGCAACGAGAGCATTTTTCAATTGGATCCTTATATCGCTACAAACGGATGAGATTTCCAATGATTTAGTGGGAGATTGTAAAGTAAAATAATTAAAAGTTAGGCATTAGATATGTAAATATTTGAAAATCTGTATGTTGTCATGAGTTGCCGTCGTCTAGATGTGTTACTCAGCAGTTTTCTTTTTAGCTTTTCAAGCAATTATATAATGAGCATGATTATGTATATAATTGTAATAATTAGTAATATTCTTTGTATGAATCACTTAATTGTTGGTTTTTTTTTTCTTGTTTAATTATTTTAAAGATTGTTAAACAGTGATGATTAAATAAATTCAATCACTAA

Network for GWHGAAEX000929

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00780.21	CNH	195	360	0.00031
PF10366.8	Vps39_1	562	637	4.00E-06
PF10367.8	Vps39_2	909	1016	1.60E-27

Protein Sequence

>GWHPAAEX000929
MTLKSGKDRAVLVAFTDFDPAKLAGFPPAVPLTIRSLAVVAASDSQTLIYVGTGGGKLILLSLNPSPQSASLASSDGNSNSHPSPPVQFLRAATISNRVVDSITVLAEIRRVILHSDGLLFLVDSLLLQPVQKLGFIKDVTAISKQLVPRASLISDPFGDGVVKTELSRPGPTFLEKLGGGILVNGTAPRVSELQRGAGTGCFFAAAAGKKLVLIEFFFPSNVDLYGERSGISILWKEIQGVEGVKTMAWVGDSIIAGTSEGYHLFSGVTGKGSLIFSLPESSPPMVKFLLRSSDVLLLFDNIGVVSNTLGQPVGGSLIFHYVPECIAEIRPYVIVARDGRLDLYRKKSGDCVQSLSLTSSSVGPCIVANDDQDTGEIVVVGTTYKVFCCRKVSPEEQIKDLLRKKHLKEAISLVEEFESDGEMTREMLFFVHAQIGFLLLFELRFKEAVDHFLLSESMDPSEIFSFIIKDPNRWSHQVPRKRYWGLHPPPVPLEQVVDDGLIAIQRAMFLRKAGIVTSTDEDFILNPPSRTDLLQSAIENIIRYFLVCREKELIHPVNEGVDTLLMYLYRALNRVPDMEELASSQNSCVVEELETLLDGSGHLRTLAFLYASKGMLSKALTIWRVLAKKYSTGFWKDITADADCDYSDSSSNSLSGQKIAAAEASKLLQESSDQALILEHIGWIADIDQECAILILTSEKRIKQLSPEEVIASIDPKKVEIHQRYLRWLIEDQDSDDMHFHTLYALSLARSAIELVERDFKQGNHHSEIFNEISVSEVTNESAHISHVREKLQLFLQASDMYDPELVLKVVGGSELWLEKAILYRKMGLEELVLEILALKLEDCEAAEQYCAEIGRQDAYMQYVFILEFDFQFCNNCLYVTCLSILFRLLDMYLNPQDGKGTMFKAAVRLLHTHGESLNPLQLLEKLSPEMPLQLASDIVLKILRARVHHQHQEQIVHNLWWAMSLDAQLARLEERSRNVQINDESVCDSCRARLGTKLFAMYPDDSIVCYKCYRRLGESTSARGRNFSEDPIFKPGWLVSR

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K20177	VPS3, TGFBRAP1	Autophagy - yeast	map04138

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	11.350
SRP064423	SRR2545915	Juvenile tuber	12.790
SRP108465	SRR5643513	five period of Gastrodia elata	11.040
	SRR5643514	five period of Gastrodia elata	12.350
	SRR5643515	five period of Gastrodia elata	13.360
	SRR5643524	five period of Gastrodia elata	11.910
	SRR5643525	five period of Gastrodia elata	11.860
	SRR5643528	five period of Gastrodia elata	11.550
	SRR5643658	five period of Gastrodia elata	10.040
	SRR5643659	five period of Gastrodia elata	15.160
	SRR5643660	five period of Gastrodia elata	13.430
	SRR5643661	five period of Gastrodia elata	15.210
	SRR5643662	five period of Gastrodia elata	16.500
	SRR5643663	five period of Gastrodia elata	16.360
	SRR5643664	five period of Gastrodia elata	15.680
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	9.930
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.770
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.180
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	9.510
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	9.640
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	9.450
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	9.240
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	8.050
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	9.670
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	8.490
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	11.470
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	11.470
SRP279888	Gastro	Gastrodia elata tuber	13.56
	Juven	Juvenile tuber	18.28
	Mother_Gastro	Mother tuber of Gastrodia elata	13.34
	Mother_Juven	Mother tuber of Juvenile	17.27