Detail information of GWHGAAEX000931/evm.TU.scaffold_103.24
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|284005877|ref|YP_003391696.1| | 1.00E-24 | glycoside hydrolase family 28 [Spirosoma linguale DSM 74] |
| nr | gi|695055679|ref|XP_009416030.1| | 8.75E-177 | PREDICTED: polygalacturonase-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|P48979|PGLR_PRUPE | 9.00E-135 | Polygalacturonase (Precursor) |
| trEMBL | tr|M0T821|M0T821_MUSAM | 1.00E-160 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P18230_001} |
| TAIR | AT2G43880 | 1.00E-131 | Pectin lyase-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000104 | 620920 | 622604 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000931
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00295.16 | Glyco_hydro_28 | 58 | 374 | 5.10E-87 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH28 |
| Carbohydrate-Active enzymes Family | GH28 |
| Carbohydrate-Active enzymes Family | GH28 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01184 | E3.2.1.15 | Metabolic pathways | map01100 |
| Pentose and glucuronate interconversions | map00040 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004650 | Molecular Function | polygalacturonase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.610 |
| SRR2545915 | Juvenile tuber | 0.370 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.210 |
| SRR5643514 | five period of Gastrodia elata | 1.460 | |
| SRR5643515 | five period of Gastrodia elata | 0.910 | |
| SRR5643524 | five period of Gastrodia elata | 1.430 | |
| SRR5643525 | five period of Gastrodia elata | 1.790 | |
| SRR5643528 | five period of Gastrodia elata | 1.800 | |
| SRR5643658 | five period of Gastrodia elata | 2.060 | |
| SRR5643659 | five period of Gastrodia elata | 1.130 | |
| SRR5643660 | five period of Gastrodia elata | 0.870 | |
| SRR5643661 | five period of Gastrodia elata | 0.890 | |
| SRR5643662 | five period of Gastrodia elata | 0.560 | |
| SRR5643663 | five period of Gastrodia elata | 1.530 | |
| SRR5643664 | five period of Gastrodia elata | 1.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.740 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.150 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.760 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.180 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.420 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.490 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.560 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 5.080 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.060 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.230 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.930 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.930 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.68 |
| Juven | Juvenile tuber | 3.79 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 5.91 | |
| Mother_Juven | Mother tuber of Juvenile | 8.00 |