Gene detail

Detail information of GWHGAAEX000934/evm.TU.scaffold_103.27

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1043	Ca2+-binding transmembrane protein LETM1/MRS7
nr	gi\|695018393\|ref\|XP_009396159.1\|	PREDICTED: LETM1 and EF-hand domain-containing protein 1, mitochondrial-like [Musa acuminata subsp. malaccensis]
trEMBL	tr\|M0SN54\|M0SN54_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P11890_001}
TAIR	AT3G59820	LETM1-like protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000104	682807	708027	+

Transcript Sequence
>GWHTAAEX000934 ATGGCGTCCAGAACCATTGCCAGCGGAAGGAGATACCTTTTAAAGCGACTGAATGTACCCGTTTGCTCTGGCTCTAGTATTTCGAATTTTGGGAGTGGCTCTGTTGCCCGTAATGCGGAGGCCAGGCTTCTCGAACATGTGTCTGAGCAGAGGACTATTGATGCTGATCAAAGAAACCAACAGAGGCTACTTTCTCTTGCAAAAGAGAAATTCTTTTGTCGGTCATCTGCAAAGTCTGTAAGAAGCAATCCTTGTGGGATTTCTGTCCTGGATAATGAATTTAGAAAATTGGATATCTTTCTTCCCTTTGGGGTTCGAGGGTTGTCGCAGTATGTGCGCACCGTATCAACAGCTACAGTTAAGCAGCCTGAAATTGGAAGTGAAGGGCATAGCGAAGATCTGAATAAAAAACATAATAAAGAGGCATCACCAGAGGAGTGTGATCAGGCTGTTGAAGGATTGAGCACTGCAAAGGCAAAAGCAAAAGCTAAGCAGCTGCATGAATCACCAAAAACCGATCAATTTATTCACAAGTTTTGGGCTAAGCTATTGGGGATTGGCCCTGCTATAAGGGCTGTTGCTTCCATGAGCAGGGAGGACTGGGCCCTAAAATTGCGCCACTGGAAGGATGAATTTGTTTCTACTATGCAGCACTACTGGCTTGGGTGTAAGTTATTATGGGCAGACATAAGGATTTCTTCAAGATTATTGCTGAGGCTCGCTGGTGGAAAGAGCCTTACTAGAAGAGAGAGAAAGCAATTGACTCGCACTACTGCTGATATTTTCAGACTTGTGCCTTTTGCAGTTTTTATCATAGTACCATTTATGGAATTTTTATTGCCAGTGTTCTTGAAGTTATTTCCAAACTTGCTTCCATCAACTTTTCAGGACAAGATGAAGGAACAGGAAACTCTCAAAAGGAAGCTTAATGCCAGAATTGAGTATGCCAAATTTTTACAAGACACTGTTAAAGAGATGGCTAATGAGGTACAAAGAACTCGTAGTGGTGAAATTAAACAGACTGCTGAAGATCTTGATGAATTTTTGAATAAGGTCAGGACTGGTACTCGTGTTTCCAATGAGGAAATTTTGAACTTTGCAAAACTCTTCAATGATGAGCTTACTTTGGATAATATTAGCAGGCCAAGGTTGGTTAATATGTGTAAATACATGGGAATAACACATATTGGGACGGATAAATATTTACGATTTATGCTTCGGAAGAAGTTACAACAGATAAAAGAAGATGATAAATTGATTCAGGCAGAAGGTGTGGAGTCACTTTCAGAGGATGAGCTTCGCCAAGCTTGTCGTGAACGCGGACATCTAGGTTTGCTTTCCAAAGAGGAGATGCGCCAACAGCTTCGGGATTGGTTGGATTTGTCTCTTAATCATTCTGTGCCTTCATCACTTCTTATACTTTCTAGAGCTTTCACTGTATCTGGAAAGCTTAAACCCGAGGAAGCTGTTGTTGCTACCTTGTCATCTCTACCTGATGAAGTTGTAGACACTGTTGGTACCGGGCTTCCATATGAGGATTCTGTTTCAGAGAGGAGGAGAAAGTTGGAGTTCCTTGAAATGCAAGAAGAACTGATCAAGGAGGAAGAGAAAGTAAAGGAGAAAGAGGAGAAGGCTAAGAAGGAGGAATCTGGTATCCACGATGAAGATGTGGCTTTAAAGGAGATGGCTGGACCTACCTTGCGTGAAGCACAAAAGCTTGTTGTAAAGGAAACAATGGAGAAAAGGGAGCAGCTTTGCAATATCAGCCGTGCATTGGCTCTTCTTGCTTCTGCCTCTTCAGTCAGTAGAGAGCGTCAGGAGTTCCTTGGGTTAGTTAATAAAGAGATAGAGTTGTACAATACCATGCTCGAGAAAGAGGGGACAGTAGGTGAGGAAGAGGCAAAGAAAGCTTACAAAGCTGCCAGGGAAAGGAGCGATCATGCGGCTGAAATTGCTGCAGGGGACAAGGTTTCATCAGCGCTTATAGACAGGGTTGATGCTATGTTACAAAAACTTGAAATAGAAATTGATGACGTTGATGCTAAAATTGGAGATCGATGGATATTACTTGACAGGGATCGTGATGGTAAAGTGACGCCTGAAGAAGTGGCTGCTGCAGCCATGTACCTAAAGGACACCCTTGATAAAGAGGGCGGTGTGCAAGAACTGATTAGCAATCTTTCAAAAGACAGAGAGGGTAAGATTCTTGTTGAGGACATCATTAAATTGGGCTCTCAGGTAGACGCAAACAATGGGGGATGA

Network for GWHGAAEX000934

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07766.12	LETM1	209	475	4.10E-109

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K17800	#N/A	Mitophagy - yeast	map04139

Gene Ontology

GO term	Ontology	Name
GO:0043022	Molecular Function	ribosome binding
GO:0005509	Molecular Function	calcium ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	76.230
SRP064423	SRR2545915	Juvenile tuber	93.190
SRP108465	SRR5643513	five period of Gastrodia elata	94.060
	SRR5643514	five period of Gastrodia elata	98.620
	SRR5643515	five period of Gastrodia elata	92.100
	SRR5643524	five period of Gastrodia elata	98.520
	SRR5643525	five period of Gastrodia elata	73.300
	SRR5643528	five period of Gastrodia elata	68.490
	SRR5643658	five period of Gastrodia elata	63.410
	SRR5643659	five period of Gastrodia elata	111.170
	SRR5643660	five period of Gastrodia elata	111.830
	SRR5643661	five period of Gastrodia elata	109.540
	SRR5643662	five period of Gastrodia elata	99.800
	SRR5643663	five period of Gastrodia elata	109.650
	SRR5643664	five period of Gastrodia elata	110.290
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	88.790
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	77.220
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	87.590
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	90.520
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	85.220
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	92.090
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	92.920
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	87.030
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	98.470
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	97.250
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	102.970
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	102.970
SRP279888	Gastro	Gastrodia elata tuber	96.09
	Juven	Juvenile tuber	122.01
	Mother_Gastro	Mother tuber of Gastrodia elata	80.16
	Mother_Juven	Mother tuber of Juvenile	92.32