Detail information of GWHGAAEX000938/evm.TU.scaffold_103.31
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|332293596|ref|YP_004432205.1| | 2.00E-77 | DEAD/DEAH box helicase domain protein [Krokinobacter sp. 4H-3-7-5] |
| KOG | KOG0337 | 0 | ATP-dependent RNA helicase |
| nr | gi|743766676|ref|XP_010913583.1| | 0 | PREDICTED: DEAD-box ATP-dependent RNA helicase 29 [Elaeis guineensis] |
| Swissprot | tr|O49289|RH29_ARATH | 0 | Putative DEAD-box ATP-dependent RNA helicase 29 |
| trEMBL | tr|M0U0B6|M0U0B6_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P14580_001} |
| TAIR | AT1G77050 | 0 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000104 | 788777 | 842031 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000938
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00270.28 | DEAD | 61 | 227 | 7.00E-48 |
| PF00271.30 | Helicase_C | 265 | 375 | 3.50E-23 |
| PF08147.11 | DBP10CT | 640 | 701 | 3.00E-15 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0003724 | Molecular Function | RNA helicase activity |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 15.280 |
| SRR2545915 | Juvenile tuber | 15.950 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 20.430 |
| SRR5643514 | five period of Gastrodia elata | 18.750 | |
| SRR5643515 | five period of Gastrodia elata | 20.250 | |
| SRR5643524 | five period of Gastrodia elata | 18.260 | |
| SRR5643525 | five period of Gastrodia elata | 18.210 | |
| SRR5643528 | five period of Gastrodia elata | 22.190 | |
| SRR5643658 | five period of Gastrodia elata | 18.660 | |
| SRR5643659 | five period of Gastrodia elata | 23.930 | |
| SRR5643660 | five period of Gastrodia elata | 20.260 | |
| SRR5643661 | five period of Gastrodia elata | 22.790 | |
| SRR5643662 | five period of Gastrodia elata | 21.710 | |
| SRR5643663 | five period of Gastrodia elata | 20.140 | |
| SRR5643664 | five period of Gastrodia elata | 20.070 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 21.690 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 17.700 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 20.730 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 19.340 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 20.500 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 21.140 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 22.490 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 21.050 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 23.630 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 22.690 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 24.240 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 24.240 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 25.29 |
| Juven | Juvenile tuber | 30.95 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 21.71 | |
| Mother_Juven | Mother tuber of Juvenile | 30.42 |