Detail information of GWHGAAEX000940/evm.TU.scaffold_103.33
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|383315603|ref|YP_005376445.1| | 9.00E-19 | endopolygalacturonase [Frateuria aurantia DSM 6220] |
| nr | gi|672189212|ref|XP_008813782.1| | 2.68E-155 | PREDICTED: polygalacturonase-like [Phoenix dactylifera] |
| Swissprot | tr|P48979|PGLR_PRUPE | 1.00E-124 | Polygalacturonase (Precursor) |
| trEMBL | tr|M0T821|M0T821_MUSAM | 4.00E-147 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P18230_001} |
| TAIR | AT2G43870 | 2.00E-123 | Pectin lyase-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000104 | 850073 | 851571 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000940
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module8 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00295.16 | Glyco_hydro_28 | 56 | 373 | 3.00E-79 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01184 | E3.2.1.15 | Metabolic pathways | map01100 |
| Pentose and glucuronate interconversions | map00040 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004650 | Molecular Function | polygalacturonase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 12.580 |
| SRR2545915 | Juvenile tuber | 8.370 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.410 |
| SRR5643514 | five period of Gastrodia elata | 2.220 | |
| SRR5643515 | five period of Gastrodia elata | 1.780 | |
| SRR5643524 | five period of Gastrodia elata | 1.810 | |
| SRR5643525 | five period of Gastrodia elata | 2.840 | |
| SRR5643528 | five period of Gastrodia elata | 1.570 | |
| SRR5643658 | five period of Gastrodia elata | 1.400 | |
| SRR5643659 | five period of Gastrodia elata | 1.960 | |
| SRR5643660 | five period of Gastrodia elata | 3.340 | |
| SRR5643661 | five period of Gastrodia elata | 2.500 | |
| SRR5643662 | five period of Gastrodia elata | 6.050 | |
| SRR5643663 | five period of Gastrodia elata | 3.420 | |
| SRR5643664 | five period of Gastrodia elata | 7.080 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.600 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.990 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.200 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.710 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.820 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.480 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.620 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.000 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.610 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.190 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.770 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.770 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.33 |
| Juven | Juvenile tuber | 2.97 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.43 | |
| Mother_Juven | Mother tuber of Juvenile | 3.66 |