Gene detail

Detail information of GWHGAAEX000944/CADD00087.3.gene

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|189502744\|ref\|YP_001958461.1\|	4.00E-19	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
KOG	KOG1187	1.00E-105	Serine/threonine protein kinase
nr	gi\|302142296\|emb\|CBI19499.3\|	2.22E-119	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q3EDL4\|Y1154_ARATH	1.00E-105	Probable serine/threonine-protein kinase At1g01540
trEMBL	tr\|A0A067H8S0\|A0A067H8S0_CITSI	2.00E-119	Uncharacterized protein {ECO:0000313\|EMBL:KDO84127.1}
TAIR	AT4G01330	1.00E-105	Protein kinase superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000104	1021495	1024424	+

Transcript Sequence
>GWHTAAEX000944 GTAAAGATGTGCTCGGATTCATACTGGCAAACAGCCAAGTCACCTAAAAGTTAAGTGAAATCGCAAAACCTAAATAATCTCTCGTTCTTTCTCCTCCAGCTCTCGGGCGGGCAATGGCGGCGCAGACGCACATCTCTCTCTCGTTCTTTCTGGTCGATCCTGCTCTCGTTCTTTATCTGCGGCGACAGCAACTAGAAGCTGCTTCCTACCCTTGTCCGCTTAAGTTCTATCCCACGCACGCACAGCAACGAGCACTGCGCCTACCCTCCTTCCGTCGTCACAATGAAGCTTCTATGCGAAAGTCCCGGCAATGGAAACGCCGAAGCATCTTCAGCAAACTAAAAAAAAAAAGTCTTTCACTCTTTCGAATTTCGATGGGGAATAACAGTTCCTCCGGGGCTAGCTACGATCTTTCAAAGCGCACGGTCATCTTCAGCCTCCATTGCTGTGCCCGAGGTATCGCACTTGGGTTGGGGTCACTGGTTCACTCTTCGGGAGCTCCAGCTCGCAACCGATATGTTCGCCTATGAAAATGTTATCGGAGAGGGAGGCTATGGCATCGTCTACCACGGGATTTTGCCCGACAATACTAATATTGCTGTCAAAAATTTGCTCAATAACCGTGGTCAAGCTGAGAGGGAATTTAAGGTGGAAGTTGAAGCAATTGGTAGGGTCCGCCATAAGAATTTGGTGAGACTTCTGGGATATTGTGCCGAAGGCGCTCATAGGATGCTTGTGTACGAGTATGTGGATAATGGAAACTTGGAGCAATGGCTTCATGGAGATGTTGGGCCTCATAGTCCTCTCACATGGGAGATCCGGATTGATATCATACTTGGAACTGCTAAAGGCCTAATGTATTTGCATGAAGGATTAGAGCCAAAGGTAGTTCATCGAGATGTCAAATCAAGCAATATAATTCTTGATAAGCATTGGAACCCCAAGGTTTCGGATTTTGGCCTTGCCAAGCTTTTGGTGTCGGAGAGGAGCTGTGTTAGAACTCGTGTTATGGGAACATTTGGCTTGTTTTTTATTGTTTTTTCTCTACGAATTTTCTTAATAATTTTAGCACCTGATGAATGATAATATATTTTATATAGAAGCATCTGATCACATTCTCACATTTATCTCACCTTTCATCATATAATTTGAATGGCTCAGATTTAAAGTGGCCAAAAGATAAAATACTTTTTTATACTCTTAGATGTATAATAGAATTGTCTTCCAAAGCAGATTGAAGAACAAACATTTTGTCTTCCAATGCAGAGTTAACAGATTCAATAATTGATTACATACATTTATGATTTTATTATAACAGAACACATAATTTGGATAAAAATTTTAGATTTTAAAGTTAAGACCCTTTTAGGTCTACATCTGTGTCATTAAGTAATATGCAAAATTTGTATGAAACTGTTAAGAAAGCACAAATGGTTGTCCAAGTGGAAGCTGTCCGTGTTCAGAAAGAACTTGCTGCGTATGCGTTGCATATTTAGATGTTAACTATCAAGTTTATCGCTCTTGGAATTATCAAAATGCATGCTGACTCATTTTATTCAATTATTTGTAGAGAAGAGTTTGATGGTTACTGTGAAGATGAGCTAATAAAGGTATGGCAATTTTCAGCATCTTTTTTTTTGCTTGAAAAATATTAAAACGTGGTAATTAAAAGCTAATTTTCTACTCAACATAGTTTTTAATTACAAGAGTTGCTCCACTGCTTCGTTGCGTTGCATTTCTCAACCAATACCTGCTCGACTGGAGTACCAATAATGTTGCATCTTTGGCCTGAGATTATTGAGGTGAGATTATTGAGGTGCTGTCCACCTTACTAAAATGGTCAGATGAAGTGCCTGCCTCATCACTCTGGTCATCTTGCATCGCCACTTTGACAAGGCATTACAGAACAGCCATATGTTTAAGGCAACTTTCGTTGTTATTTTTGGTCAAAGATGGTGGCCATATCTTCCTAAATCATTACAGAACAGTTAGCTGAGTTTGTCTCACTCACCATAAGCCAAATCATGAGTATTCATGGCATCCCATCCGTCATTCACCACTTCTTCCTCCATATTTTTTAATGCATTTTACAGTTTTTTGTATTCTTAGATTGGATGATTCATACCTTACTCTCATATCTTATAGTTCAGTTGATCTAAAATAGTTGATTTTGTGGTTTGCAGATTAAGCATGATATATCCAGTCTGCAACATGTTCAAGCTACTTTTATGTGCTGTTTGTCAAGTTGAGATGAAGCCTGGAGAGGGCATTTCGGTGCACACGGGCTCATCCAAGTCCACAAAATTTCGAACCTGGGATGGCCCGCTGCTCTGCTGCAGCTGCCAGGCTAAGAAAGAAGCTATGGAAGGAAGAAGACCATTGAATGGTAC

Network for GWHGAAEX000944

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.24	Pkinase	174	336	4.90E-31

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-V

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0004672	Molecular Function	protein kinase activity
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.610
SRP064423	SRR2545915	Juvenile tuber	1.740
SRP108465	SRR5643513	five period of Gastrodia elata	3.230
	SRR5643514	five period of Gastrodia elata	3.590
	SRR5643515	five period of Gastrodia elata	2.980
	SRR5643524	five period of Gastrodia elata	3.010
	SRR5643525	five period of Gastrodia elata	3.450
	SRR5643528	five period of Gastrodia elata	1.470
	SRR5643658	five period of Gastrodia elata	2.060
	SRR5643659	five period of Gastrodia elata	2.570
	SRR5643660	five period of Gastrodia elata	3.830
	SRR5643661	five period of Gastrodia elata	3.050
	SRR5643662	five period of Gastrodia elata	2.640
	SRR5643663	five period of Gastrodia elata	3.370
	SRR5643664	five period of Gastrodia elata	2.620
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.670
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	1.950
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	2.990
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	2.970
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.680
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.110
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	2.130
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	1.710
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.310
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	2.360
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.010
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.010
SRP279888	Gastro	Gastrodia elata tuber	1.79
	Juven	Juvenile tuber	3.32
	Mother_Gastro	Mother tuber of Gastrodia elata	2.22
	Mother_Juven	Mother tuber of Juvenile	2.47