Detail information of GWHGAAEX000945/evm.TU.scaffold_103.38


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|530780016|ref|YP_008431818.1|4.00E-1730S ribosomal protein S5 [Thermofilum sp. 1910b]
KOGKOG08771.00E-4440S ribosomal protein S2/30S ribosomal protein S5
nrgi|698496722|ref|XP_009794389.1|1.22E-44PREDICTED: 40S ribosomal protein S2-3, partial [Nicotiana sylvestris]
Swissprottr|Q93VB8|RS22_ARATH3.00E-4540S ribosomal protein S2-2
trEMBLtr|U5GS81|U5GS81_POPTR6.00E-45Uncharacterized protein {ECO:0000313|EMBL:ERP66430.1} (Fragment)
TAIRAT1G593591.00E-44Ribosomal protein S5 family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000010411282241137751+
Transcript Sequence

Network for GWHGAAEX000945

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03719.14Ribosomal_S5_C961419.30E-16
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02981RP-S2e, RPS2 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms12.860
SRR2545915Juvenile tuber14.760
SRP108465SRR5643513five period of Gastrodia elata0.000
SRR5643514five period of Gastrodia elata0.000
SRR5643515five period of Gastrodia elata0.000
SRR5643524five period of Gastrodia elata0.000
SRR5643525five period of Gastrodia elata0.000
SRR5643528five period of Gastrodia elata0.000
SRR5643658five period of Gastrodia elata0.190
SRR5643659five period of Gastrodia elata0.200
SRR5643660five period of Gastrodia elata0.000
SRR5643661five period of Gastrodia elata0.450
SRR5643662five period of Gastrodia elata0.230
SRR5643663five period of Gastrodia elata0.000
SRR5643664five period of Gastrodia elata0.000
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_10.260
SRR6049655Rhizomagastrodiae_C368-T10_good_10.000
SRR6049656Rhizomagastrodiae_C368-T07_good_10.220
SRR6049657Rhizomagastrodiae_C368-T07_good_10.790
SRR6049658Rhizomagastrodiae_C368-T04_good_10.980
SRR6049659Rhizomagastrodiae_C368-T04_good_10.000
SRR6049660Rhizomagastrodiae_C368-T01_good_10.220
SRR6049661Rhizomagastrodiae_C368-T04_good_10.530
SRR6049662Rhizomagastrodiae_C368-T01_good_10.800
SRR6049663Rhizomagastrodiae_C368-T01_good_10.200
SRR6049664Rhizomagastrodiae_C368-T10_good_10.900
SRR6049665Rhizomagastrodiae_C368-T10_good_10.900
SRP279888GastroGastrodia elata tuber 0.45
JuvenJuvenile tuber0.39
Mother_GastroMother tuber of Gastrodia elata 0.00
Mother_JuvenMother tuber of Juvenile 0.25