Detail information of GWHGAAEX000959/evm.TU.scaffold_103.58


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743765329|ref|XP_010912883.1|0PREDICTED: protein SHORT-ROOT-like [Elaeis guineensis]
Swissprottr|Q9SZF7|SHR_ARATH1.00E-140Protein SHORT-ROOT
trEMBLtr|A0A061EK79|A0A061EK79_THECC0GRAS family transcription factor {ECO:0000313|EMBL:EOY04802.1}
TAIRAT4G376504.00E-140GRAS family transcription factor

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000010421569412158269+
Transcript Sequence

Network for GWHGAAEX000959

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03514.13GRAS734411.80E-94
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyGRAS

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms7.470
SRR2545915Juvenile tuber5.120
SRP108465SRR5643513five period of Gastrodia elata57.770
SRR5643514five period of Gastrodia elata121.490
SRR5643515five period of Gastrodia elata60.390
SRR5643524five period of Gastrodia elata136.560
SRR5643525five period of Gastrodia elata24.750
SRR5643528five period of Gastrodia elata19.870
SRR5643658five period of Gastrodia elata45.660
SRR5643659five period of Gastrodia elata23.480
SRR5643660five period of Gastrodia elata12.850
SRR5643661five period of Gastrodia elata15.260
SRR5643662five period of Gastrodia elata5.920
SRR5643663five period of Gastrodia elata11.990
SRR5643664five period of Gastrodia elata7.320
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_146.270
SRR6049655Rhizomagastrodiae_C368-T10_good_136.540
SRR6049656Rhizomagastrodiae_C368-T07_good_172.320
SRR6049657Rhizomagastrodiae_C368-T07_good_136.780
SRR6049658Rhizomagastrodiae_C368-T04_good_131.730
SRR6049659Rhizomagastrodiae_C368-T04_good_131.620
SRR6049660Rhizomagastrodiae_C368-T01_good_155.100
SRR6049661Rhizomagastrodiae_C368-T04_good_128.040
SRR6049662Rhizomagastrodiae_C368-T01_good_171.040
SRR6049663Rhizomagastrodiae_C368-T01_good_183.840
SRR6049664Rhizomagastrodiae_C368-T10_good_175.460
SRR6049665Rhizomagastrodiae_C368-T10_good_175.460
SRP279888GastroGastrodia elata tuber 8.66
JuvenJuvenile tuber50.62
Mother_GastroMother tuber of Gastrodia elata 45.37
Mother_JuvenMother tuber of Juvenile 24.42