Detail information of GWHGAAEX000970/evm.TU.scaffold_103.72


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|312136871|ref|YP_004004208.1|1.00E-4930S ribosomal protein S12 [Methanothermus fervidus DSM 2088]
KOGKOG17492.00E-9540S ribosomal protein S23
nrgi|661887154|emb|CDP08934.1|8.97E-98unnamed protein product [Coffea canephora]
Swissprottr|P46297|RS23_FRAAN9.00E-9840S ribosomal protein S23
trEMBLtr|A0A068UL09|A0A068UL09_COFCA3.00E-98Coffea canephora
TAIRAT5G029602.00E-95Ribosomal protein S12/S23 family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000010426244782629834+
Transcript Sequence

Network for GWHGAAEX000970

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00164.24Ribosom_S12_S23311416.20E-50
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02973RP-S23e, RPS23 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0015935Cellular Componentsmall ribosomal subunit
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms172.390
SRR2545915Juvenile tuber347.620
SRP108465SRR5643513five period of Gastrodia elata376.990
SRR5643514five period of Gastrodia elata429.130
SRR5643515five period of Gastrodia elata380.040
SRR5643524five period of Gastrodia elata403.190
SRR5643525five period of Gastrodia elata167.810
SRR5643528five period of Gastrodia elata194.420
SRR5643658five period of Gastrodia elata124.160
SRR5643659five period of Gastrodia elata400.910
SRR5643660five period of Gastrodia elata371.140
SRR5643661five period of Gastrodia elata399.990
SRR5643662five period of Gastrodia elata298.180
SRR5643663five period of Gastrodia elata296.810
SRR5643664five period of Gastrodia elata241.340
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1300.570
SRR6049655Rhizomagastrodiae_C368-T10_good_1392.230
SRR6049656Rhizomagastrodiae_C368-T07_good_1391.510
SRR6049657Rhizomagastrodiae_C368-T07_good_1273.440
SRR6049658Rhizomagastrodiae_C368-T04_good_1247.890
SRR6049659Rhizomagastrodiae_C368-T04_good_1199.270
SRR6049660Rhizomagastrodiae_C368-T01_good_1302.540
SRR6049661Rhizomagastrodiae_C368-T04_good_1299.280
SRR6049662Rhizomagastrodiae_C368-T01_good_1467.670
SRR6049663Rhizomagastrodiae_C368-T01_good_1403.180
SRR6049664Rhizomagastrodiae_C368-T10_good_1475.840
SRR6049665Rhizomagastrodiae_C368-T10_good_1475.840
SRP279888GastroGastrodia elata tuber 330.67
JuvenJuvenile tuber276.70
Mother_GastroMother tuber of Gastrodia elata 165.68
Mother_JuvenMother tuber of Juvenile 129.13