Detail information of GWHGAAEX000973/evm.TU.scaffold_103.75
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|429190136|ref|YP_007175814.1| | 2.00E-25 | methyltransferase [Natronobacterium gregoryi SP2] |
| KOG | KOG2078 | 0 | tRNA modification enzyme |
| nr | gi|672111327|ref|XP_008800151.1| | 0 | PREDICTED: tRNA (guanine(37)-N1)-methyltransferase 2 [Phoenix dactylifera] |
| Swissprot | tr|C5XX79|TRM5_SORBI | 0 | tRNA (guanine(37)-N1)-methyltransferase {ECO:0000255|HAMAP-Rule:MF_03152} |
| trEMBL | tr|K3YS70|K3YS70_SETIT | 0 | tRNA (guanine(37)-N1)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_03152} |
| TAIR | AT3G56120 | 0 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000104 | 2727615 | 2782309 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000973
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02475.15 | Met_10 | 101 | 391 | 4.80E-62 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0030488 | Biological Process | tRNA methylation |
| GO:0009019 | Molecular Function | tRNA (guanine-N1-)-methyltransferase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 37.690 |
| SRR2545915 | Juvenile tuber | 38.170 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 18.970 |
| SRR5643514 | five period of Gastrodia elata | 18.930 | |
| SRR5643515 | five period of Gastrodia elata | 18.990 | |
| SRR5643524 | five period of Gastrodia elata | 17.510 | |
| SRR5643525 | five period of Gastrodia elata | 29.210 | |
| SRR5643528 | five period of Gastrodia elata | 26.570 | |
| SRR5643658 | five period of Gastrodia elata | 24.980 | |
| SRR5643659 | five period of Gastrodia elata | 17.230 | |
| SRR5643660 | five period of Gastrodia elata | 19.490 | |
| SRR5643661 | five period of Gastrodia elata | 17.890 | |
| SRR5643662 | five period of Gastrodia elata | 18.240 | |
| SRR5643663 | five period of Gastrodia elata | 16.550 | |
| SRR5643664 | five period of Gastrodia elata | 16.360 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 22.100 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 25.780 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 22.960 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 22.020 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 20.620 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 20.730 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 22.110 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 20.410 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 22.550 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 19.150 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 23.450 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 23.450 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 14.45 |
| Juven | Juvenile tuber | 19.15 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 24.50 | |
| Mother_Juven | Mother tuber of Juvenile | 20.57 |