Detail information of GWHGAAEX000974/evm.TU.scaffold_103.76


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG19904.00E-125Poly(A)-specific exoribonuclease PARN
nrgi|672111313|ref|XP_008800087.1|4.03E-155PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Phoenix dactylifera]
Swissprottr|Q67XL4|Y3544_ARATH2.00E-48Uncharacterized CRM domain-containing protein At3g25440, chloroplastic (Precursor)
trEMBLtr|B9T543|B9T543_RICCO6.00E-154Putative uncharacterized protein {ECO:0000313|EMBL:EEF29024.1}
TAIRAT2G284804.00E-125RNA-binding CRS1 / YhbY (CRM) domain protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000010427838552788644-
Transcript Sequence

Network for GWHGAAEX000974

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module8

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01985.20CRS1_YhbY1722564.10E-19
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003723Molecular FunctionRNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms126.130
SRR2545915Juvenile tuber60.870
SRP108465SRR5643513five period of Gastrodia elata17.990
SRR5643514five period of Gastrodia elata16.340
SRR5643515five period of Gastrodia elata13.410
SRR5643524five period of Gastrodia elata15.680
SRR5643525five period of Gastrodia elata29.260
SRR5643528five period of Gastrodia elata28.480
SRR5643658five period of Gastrodia elata25.550
SRR5643659five period of Gastrodia elata26.070
SRR5643660five period of Gastrodia elata28.480
SRR5643661five period of Gastrodia elata24.690
SRR5643662five period of Gastrodia elata14.840
SRR5643663five period of Gastrodia elata18.340
SRR5643664five period of Gastrodia elata18.260
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_126.660
SRR6049655Rhizomagastrodiae_C368-T10_good_128.510
SRR6049656Rhizomagastrodiae_C368-T07_good_122.020
SRR6049657Rhizomagastrodiae_C368-T07_good_129.500
SRR6049658Rhizomagastrodiae_C368-T04_good_122.240
SRR6049659Rhizomagastrodiae_C368-T04_good_129.970
SRR6049660Rhizomagastrodiae_C368-T01_good_125.600
SRR6049661Rhizomagastrodiae_C368-T04_good_125.050
SRR6049662Rhizomagastrodiae_C368-T01_good_114.910
SRR6049663Rhizomagastrodiae_C368-T01_good_118.400
SRR6049664Rhizomagastrodiae_C368-T10_good_121.750
SRR6049665Rhizomagastrodiae_C368-T10_good_121.750
SRP279888GastroGastrodia elata tuber 25.00
JuvenJuvenile tuber30.31
Mother_GastroMother tuber of Gastrodia elata 9.01
Mother_JuvenMother tuber of Juvenile 12.83