Gene detail

Detail information of GWHGAAEX000984/evm.TU.scaffold_103.91

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|333911635\|ref\|YP_004485368.1\|	5.00E-09	KH domain-containing protein [Methanotorris igneus Kol 5]
KOG	KOG1676	9.00E-77	K-homology type RNA binding proteins
nr	gi\|743815959\|ref\|XP_010930503.1\|	3.15E-166	PREDICTED: LOW QUALITY PROTEIN: far upstream element-binding protein 2-like [Elaeis guineensis]
trEMBL	tr\|M0TB41\|M0TB41_MUSAM	6.00E-140	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P28960_001}
TAIR	AT4G10070	9.00E-77	KH domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000104	3286485	3300402	+

Transcript Sequence
>GWHTAAEX000984 TAAATCCTACGCCTCGTGATATAATGTTTCATATAAAGGAACCTCCCCGCACGGAAGCCCTAGGACAAATTCCATTGCATCGCCGCTTTCCAATTTCCTCTTCTTCCCCATCCTATCCTTTCGCAACCCTAAAACTCCACTACCGTTTCTCAAAGGCAGTTCTTCTATTTTTTTTCTTGTCGAACACGGCTAACTCTTTTCCATGGCGGAGGCTGAAGTAACCGTGGGTTCCGAATCAGTAACATGTGATAAAAAAGATGTTTCTCCATCGTCGGAGGAAAGGGAGTCAGAAGTGCCTGAACTTCTTGAAGATGGTATGCCCGTGGGATCTATTAAAGTGCCACTGATCGAGGATTCGCCCGATCGGAAGAGGAAGTTGGCGGATCTAGAACCTTTGGATAACGATGAGATATCGATGAAGAAGCAGCAGATCGATGGCACAGTTTCCGTTTCAGAGGACCCTGCTCCTGTAGAAGGCGAGGCGTCGATGTCGCCAGAGGCAAAGAAGCTGGATATCAATGGAGATGAAACTTCAGACTCTGGACATCAAGAAACAATTAAACATGTTCCTGTTGAGGATACCTCTGTATCAGATGCGGCGCTCGTTAGTTCTGCTGATGATGTGTATGTTGTTGCGGAGCAGCCGCGGCATGATGGAGATAGCGCAGGTCTTGAGCAGGTTAATTTGGAAGCTGAGCCAGTAGGAAATGGGCAAATTCGATCCACGGATGATGGCCAGCAGTCTTATGTGGACGATATGCATAAGTCTTTTGCTTCTGTTCCTCACCAAGACAACCTTTTGCATTCTGCACAGCAACATTTTGTTGATCATTCAATTTCACGAAAAATTGAAGTTCCGAACAACAAGGTTGGGGTTCTTATAGGAAAATCTGGGGAAACTATTAGATATCTGCAAATAAATTCTGGTGCTAAGATTCAAATTACAAGGGATGGTGATAATGATCCTCATTCTACTGTGAGATATGTTGATCTGACAGGGAGTCTTGAAAACATTAACAAGGCAGAGCAGCTGATCAAAGATGTTATTGCAGAGGCCAATGCTGGGGGTTCGCCTGCGCTTGTGGCTAGGGGATTTAATACACAGTCTGGTGGAGAACAATTTGAGATGCAGATTCCAGCAGACAAGGTGGGTATGATTATAGGTAAAGGTGGCGAGACTATCAAGAGTCTACAAACAAAAACTGGTGCTCGGATACAGTTGCTACCACAAAACCTTACTAATGGCGATGCTTCAAAGGAAAGAACAGTCCGTATAACTGGGAACATAAAGCAAATTGAATCTGCTCAAGAATTGATCAAGGATGTTATGAACAAGGTTCCCATACGACCCTCATCACACTCCAACAGAAACAGCCAGCACGCCTTTCGCCCTCCGCGTGGGTCCACTCCATCAGGCCAATGGGGCCCTCGCGGGGCCAACCCAAATCATCCGCCGATGGGTTATAATCATCAGCAGAGAGGTGGTATGTATCCACCTCAGAGTGCTCACTATCCTCAGCCGCACGGTGGTGGCTATTCGTCGCAGCAACAGCCCCCTCCAAGAGGCTGGGAGCAGCCGAGGCCTGTCGCCGCCGCCGCTCCTCCTATGCAGGCCGCCCCTCCATCTGGAGGTTATGGTGGTTACTATAATCACCAACAAGGCGGTCCTTCCCCAAACCCTCAACCATCAAACCCAATGTCCGGCCCATTGGGCGGCGCACCCCCTCCCATGGGCTACAACAGCTATGGCCGGCCACAAGCTTCAGATGGCTATGGCCATCAAGCCCAGTACGCACAGCCTCCTCCTGTTCAGCAGAGCTACGGGCATGGCTACAACGAACCCTCCAACATGTACGGCCAGCAACAGCCTGGAATGTATGGGCAGCAACCTGCCACACCTTATGGAAAGCCTGCCTACAACGACGCACCTTCGTCGTACAGCCAACCTCGAGGGCCCCAGCCCGGAGATTCAATGTATCAGGCCCCGGCTCAGTATCCGCAAAGTGCGGTTACGGCGGCACCGATGCAGCAGCAGCAGTATCCGTACGGTTCAAGCGCGCCGTTGCAGCAGGCAGCAGCCGTGGCATCTTCTTACGGCCAGCTGACCTACTCTGCCTCGCCTGCGGATGGGTACTTGCAGCAACCCTCGGCCGGCGTCTATCCTCAGCCTGGTTCGGGATACGGGCAGGCTACGCAGGTGTATGCTCAGCCTGTGCCTCAGCCCAGTGGGTACAGTCAGTACACTTCGTCTCAGCAGGGCTACGGCGATCAGCCGGCTCAGGCCAGCTCAAGCTATGGATATCAGGGAGGGGTTTCCTCCGATGCTGCCGGAGGCTATACTGGAAATGCTACCGGCATTGGCTATGCTGCGCCGCAGCCTGTAGCTGGCAGCCAACTGGGCTATTCCCAACCACAGCCAAATCTGTCTGGATATTACGAGCAGCCTGCTGTGCCTCAGCAGCAGGGTTATGGGGGTGTTCCGGCTCCAGCGGCTGCTGCTGCCGCAGCTCCGACTCCTGCTCCGGCCGGTTATGGTAAAAGCGTTTCTCCACAGCCGGGATATGGCCAGTATGATGCGTCAGCAGCTCAGTTGTATGGTCAACAGTAGAATTTTGTTTGATTATGCTTTTTTTTAATAAAGCTTGAGACCTGAATCGTATTGTTCTACTGTTTCTATTGTTATCAAAACCGCTGACTGTGTTTTCTGAATATGCTGAGTAGCAGTAGTTGTGGTTCTAGGATTTTGTTTTGGTATTATCTTGTGTACCCAACTTGAGCTGAATCTATTGTTCTTTTTTTTGGGAGGTTTATCATTCTGTTAATTTGAACTAATTTGCTGTTTCTGAAAGTGGATAATTTTAATCAGATTATTAATGGTTTTTTATCAGTCG

Network for GWHGAAEX000984

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00013.28	KH_1	214	279	2.30E-14
PF00013.28	KH_1	307	373	8.60E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding
GO:0003723	Molecular Function	RNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	57.560
SRP064423	SRR2545915	Juvenile tuber	75.250
SRP108465	SRR5643513	five period of Gastrodia elata	93.140
	SRR5643514	five period of Gastrodia elata	83.180
	SRR5643515	five period of Gastrodia elata	92.740
	SRR5643524	five period of Gastrodia elata	84.690
	SRR5643525	five period of Gastrodia elata	74.290
	SRR5643528	five period of Gastrodia elata	84.640
	SRR5643658	five period of Gastrodia elata	64.280
	SRR5643659	five period of Gastrodia elata	140.470
	SRR5643660	five period of Gastrodia elata	149.520
	SRR5643661	five period of Gastrodia elata	134.490
	SRR5643662	five period of Gastrodia elata	139.720
	SRR5643663	five period of Gastrodia elata	129.540
	SRR5643664	five period of Gastrodia elata	148.470
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	97.360
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	92.600
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	107.640
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	87.450
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	99.950
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	92.290
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	101.860
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	102.110
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	122.850
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	125.560
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	105.440
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	105.440
SRP279888	Gastro	Gastrodia elata tuber	177.69
	Juven	Juvenile tuber	156.36
	Mother_Gastro	Mother tuber of Gastrodia elata	108.43
	Mother_Juven	Mother tuber of Juvenile	139.12