Detail information of GWHGAAEX000986/evm.TU.scaffold_103.94
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|182677013|ref|YP_001831159.1| | 5.00E-32 | cytochrome c class I [Beijerinckia indica subsp. indica ATCC 9039] |
| KOG | KOG3453 | 1.00E-72 | Cytochrome c |
| nr | gi|672173701|ref|XP_008806985.1| | 2.87E-73 | PREDICTED: cytochrome c [Phoenix dactylifera] |
| Swissprot | tr|O22642|CYC_FRIAG | 7.00E-75 | Cytochrome c |
| trEMBL | tr|K4B1P8|K4B1P8_SOLLC | 2.00E-73 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc01g103220.2.1} |
| TAIR | AT4G10040 | 1.00E-72 | cytochrome c-2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000104 | 3407381 | 3417082 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000986
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00034.20 | Cytochrom_C | 13 | 109 | 2.00E-13 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K08738 | CYC | Two-component system | map02020 |
| Apoptosis | map04210 | ||
| Apoptosis - fly | map04214 | ||
| Apoptosis - multiple species | map04215 | ||
| p53 signaling pathway | map04115 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0020037 | Molecular Function | heme binding |
| GO:0009055 | Molecular Function | electron carrier activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 11.350 |
| SRR2545915 | Juvenile tuber | 27.220 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 94.150 |
| SRR5643514 | five period of Gastrodia elata | 169.710 | |
| SRR5643515 | five period of Gastrodia elata | 104.870 | |
| SRR5643524 | five period of Gastrodia elata | 158.740 | |
| SRR5643525 | five period of Gastrodia elata | 93.750 | |
| SRR5643528 | five period of Gastrodia elata | 196.000 | |
| SRR5643658 | five period of Gastrodia elata | 112.120 | |
| SRR5643659 | five period of Gastrodia elata | 94.910 | |
| SRR5643660 | five period of Gastrodia elata | 79.240 | |
| SRR5643661 | five period of Gastrodia elata | 85.120 | |
| SRR5643662 | five period of Gastrodia elata | 35.910 | |
| SRR5643663 | five period of Gastrodia elata | 64.250 | |
| SRR5643664 | five period of Gastrodia elata | 30.040 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 67.630 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 274.850 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 92.090 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 43.420 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 46.370 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 41.240 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 58.890 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 45.920 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 124.480 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 102.430 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 177.500 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 177.500 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 26.43 |
| Juven | Juvenile tuber | 37.13 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 28.41 | |
| Mother_Juven | Mother tuber of Juvenile | 26.21 |