Gene detail

Detail information of GWHGAAEX000987/evm.TU.scaffold_103.95

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1279	Chromatin remodeling factor subunit and related transcription factors
nr	gi\|743764662\|ref\|XP_010912539.1\|	PREDICTED: SWI/SNF complex subunit SWI3C-like [Elaeis guineensis]
Swissprot	tr\|Q9XI07\|SWI3C_ARATH	SWI/SNF complex subunit SWI3C
trEMBL	tr\|M0TUW4\|M0TUW4_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P30120_001}
TAIR	AT1G21700	SWITCH/sucrose nonfermenting 3C

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000104	3514019	3558974	-

Transcript Sequence
>GWHTAAEX000987 AAAAAAAAAAAACACCCTTGTTTGCTGAATGTAGTAGCACCTAAGCGCTTACTCGTTGGGCTCGATGGTGGCTCGGTTGCCCACGCGATTACGCTGGGCACATCGTCTAGGTTCAATTTTGAGGTATTGATCCATTAGAGCTTCAGCCAATATCGGCCGGCCGCGGTACGGTGCTCCGCGCTCTCGCTACCGGTACCACCCTGGTGCTCTCTCGCTCTCGCTCTCTTCTATCTCGTGCCCTCGCTAGTGGCCAGTCGTCAAAAACCACATCGACGTCCTATTCTCGCTTCGCCATGTCACCTGCTTCTCCTTCTATCCCATCTTCTGATTCACAGCTTAAGTGGAGAAAGCGGAAGCGGGAGAGCAACCTCAAGCGTCCGAAGAAGCCACGCAACGAGGAGGAAGACGAAGAGGATGAGGCTGCGGCAGCTGGCGATGAGGATGCTGGGGATGGAGACCGCGACTCTCCCTCTTCAAATCGGAATGGTGACAGTGCTGTCGTCCATAGACAGAGCGAGGTCCTCTCCGACGGTGGTCAGCGGATTTGCGACTTCCCTTCCGTCCTCCGTCGCACTGTAAACTGCCTGCATCCCTCCGTAGTCTCCATCGTGGCTGCGGAACGGCAGCAATTCTCAGGCTCTTTAGCTGGTAACGAGAGTGCTTTCAGCCTTCCTTTTCTTGAGAATATATCCCATGGCCAGCTGCAGTCCATATCTACTGTCCTCCCCGACCACCCTTCTCTCCAGCCACCAGACGTTGACAAGCCCTCGGCGTACGTTTGCACGCCTCCTGCTCTCATGGAAGGCAAGGGTGTCAACAAACCGTTTGGGAACAATCAAGTCATTTATGTTCCAATGCACTCTGATTGGTTTTCTCAAAACACGGTTCACCGCTTGGAGAGGCAAGTTATACCGCACTTCTTTTCGGGGAAGTCTGCAGAACACACTCCAGAGAAGTACGTTGTTTTAAGAAACAAGATTATTGCAAAGTACATGGAGAATCCTGGCAGAAGACTTTCCTTTGCAGATTGCCAGGGGCTTGTAGCTAGCAACGAGCTTTATGATCTCAGCCGGATTGTGAGGTTCTTGGACCACTGGGGGATAATCAATTATCTCTCTGCCTCCTCTGTTCATCGTGGGCTTAGGATGGCTGGGTCACTTCTTAGAGAGGATGCCAATGGGGAGCTCAGTGTTCAAACAGCGCCATTGAGATCCATTGATAGCTTGGTTTTATTTGATAGGCCTAAATGTAGCCTCAAGCTAGATGATGTAGCCCTGTTGCCAATGAGTTCATTATCTAAAGATTCAGCTTCAGGGTTGGGTGATTTGGATGTTAGAATTCGAGAAAGGTTATCTGAACATTTTTGCACCTACTGTTCCCGACCGTTGCCTAACTTTTTCTACCAATCCCAGAAGGAGGCTGAGACAATCTTATGTTTAGAATGCTTTAATGATGCTAAATTTATCACCGGCCACTCAAGCTTAGATTTTGTCCAAATGAACACTAAGAAAGATTTGACTGATGTAGATGTGGATATTTGGACGGATCAGGAAACATTATTGCTTCTTGAAGCCGTAGAGAAATTTAATGACAATTGGAATGAAATTGCTGAGCATGTCGCTACCAAGTCAAAAGCACAATGCATTCTTCATTTTCTACGTCTTCCGATGGAGGATGGTTTGCTTGAAAATTTTGAGGTTCCACAAGCAGAAATTTCTGCTGTTTCATTGGAGATACAATATGATGGATTCACTTGCTCAAATTCTGGTGGTCACACTGAAACTTCAGAGGTTAATTCTGGAGATCAACTTCCCTTTGCTGGCTCGAAGAACCCTGTCATGTCTCTGGTTGCATTTTTGGCCTCTGCAGTTGGACCTAGAGTTGCAGCTGCCTGTGCTAGTGCAGCATTATCTGTCCTTACTAAAGAAGATCCCAGGGCAAGTTCAGACAATGTGCGTGCTGAAGTTGGTTCCACGGGAATAACTCATACAAATGCAGATGAAAATAACAAAGAGCAAGCCATAAATATTAAAAGCGATGCAACTTCTCTCACTTGTGAGCATGTAAGGTATGCTGCAAAGTGTGGTCTTTCTGCTGCTGCAATTAAAGCCAAACTTTTTGCAGACCAAGAGGAACGTGATGTTCAGAGACTGGCTGCAAATATTATCAATCACCAGTTAAAGAGAATGGAGCTGAAGCTGAAGCAGTTTGCAGAGGTGGAAACCTTGCTATTGAAGGAATGCGAGCAGGTGGAGAGGACGAGGCAGAGGCTTTCAGCCGAGCGCTCGAGGATGCTATCCGCTCGCTACGCAACGTCTGCCGCTGCCATGCCAGCCGCGCCCGTCGGCGGGCCTTTGAATCCCCCTCCCGGTCACGTAAACCCTGGCAGACCATCCACTATGCCCGCCACCGGTGTGCAGGCAAATCTCTCACCCGTCTACGGGAGCGCCATGCCCCACCCTCACATGCAACAATACATGCAGCGGCACCCGATGTTCTCGTTCGGTCCGCGGCTTCCTCTCTCCGCCATTAACCCGTCCTCTTCCGGCTCTTCTCCTAATGCGATGTTCAATTCAAGCTTGAGATCATCCTCCGGTAATAACTCCAGCCTGGGCTGATGAGGCCGCCTGCCTGCAAATCTTGTATACAACAGTGCGAGGGGATCCTTTTTAGTTGATGTAGCTGTGGGGACTATATGCATCCATTTTTTTGTAAATTGCTTATTTTTGATAAGCTCTGATTATATGCATCTAGTTAAAACTTAGGGTTTTAGAAATTTGGCCGTTGAAAATGGGGCCGAGATTTTAACTATTATTTGGTTGCTATTTAGGGTTAAATATTTTTTTATTTGCTGCAGAAATTTTTCTTTTTTTCAGGTTTTTTTGGTTATGTAATTGAATAAGTAGGTTTTGAAAATATTTTTATTTCTTTTAGGGTTATTTGCACACATAGCATCCAAATTTTTAAGTGGTATATATC

Network for GWHGAAEX000987

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04433.16	SWIRM	188	273	2.80E-22
PF00249.30	Myb_DNA-binding	416	457	5.90E-11
PF16495.4	SWIRM-assoc_1	597	671	1.80E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11649	SMARCC	Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	27.500
SRP064423	SRR2545915	Juvenile tuber	20.360
SRP108465	SRR5643513	five period of Gastrodia elata	17.730
	SRR5643514	five period of Gastrodia elata	17.130
	SRR5643515	five period of Gastrodia elata	16.110
	SRR5643524	five period of Gastrodia elata	16.230
	SRR5643525	five period of Gastrodia elata	17.890
	SRR5643528	five period of Gastrodia elata	16.410
	SRR5643658	five period of Gastrodia elata	18.300
	SRR5643659	five period of Gastrodia elata	15.660
	SRR5643660	five period of Gastrodia elata	20.090
	SRR5643661	five period of Gastrodia elata	15.530
	SRR5643662	five period of Gastrodia elata	15.620
	SRR5643663	five period of Gastrodia elata	16.680
	SRR5643664	five period of Gastrodia elata	18.270
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	23.520
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	19.090
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	21.280
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	29.200
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	31.610
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	32.460
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	29.650
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	28.960
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	21.770
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	24.270
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	18.630
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	18.630
SRP279888	Gastro	Gastrodia elata tuber	20.79
	Juven	Juvenile tuber	34.85
	Mother_Gastro	Mother tuber of Gastrodia elata	21.42
	Mother_Juven	Mother tuber of Juvenile	30.24