Gene detail

Detail information of GWHGAAEX000988/CADD00092.4.gene

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743816803\|ref\|XP_010930750.1\|	0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Elaeis guineensis]
Swissprot	tr\|Q9SZL8\|FRS5_ARATH	3.00E-105	Protein FAR1-RELATED SEQUENCE 5
trEMBL	tr\|I1QBM9\|I1QBM9_ORYGL	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:ORGLA07G0152100.1}
trEMBL	tr\|I1QBM9\|I1QBM9_ORYGL	4.00E-21	Uncharacterized protein {ECO:0000313\|EnsemblPlants:ORGLA07G0152100.1}
TAIR	AT4G38180	1.00E-104	FAR1-related sequence 5

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000104	3688131	3691981	+

Transcript Sequence
>GWHTAAEX000988 GTTGAGATCTCGTCCATTTACACAAATCTCGAAGAATTCATCCAAGGCAAAGTTGAACACCCTAAGACGCCCATCCTTCGATCGCCGAACGTGTCAAACATCCACTGCGGTCGGACTCGTCCGATTTTCTCCGAACTTCCCTTTCTCGCCGATCCATCCAAGCTAGGTCGTAGCATCCGATCGCGCTCTTATTCCCTCCCTCCAACATTTTTTCGGATGTTTAAGAGGATTCGGTTTCCCCTTTCTCTTAATCTTTGCCTACCGTGTCGATTCCGGTTGCATTCCAGGGTTTTCTCTGTTCCGCGTAACTTCTAATGCCATTAAACTCTCCACGAGGAATTAGTATTAGCTTTTAGAAATAAATGTAAAGTTGTAATTTTTTGCTCTGAAACTATCCGAGCGAGGAGTGGAGAGATGTCCCAGACGGCCGAAGAAAGTAGGGATGGCAGTTCTTGTGCGGATGCCTCGGACGAAAGCTGGGTGCCAAAGCTTGATATGGTGTTTGAGAGTGATGAGAAGGCCTACCAGTTCTACTGCTTGTATGCCAGAGAGATTGGATTTGGTGTTAGGAAGAATGTGGTTAAGCGGCGGGCTAATAATTCTGTGTATTCCAGGGGATTTTGCTGTTACAAGGAAGGGTTCTGCAGGACGATGAAGGAGGGGAAGAAGCCTAGATCGGATGTGAGAACAGGCTGTGGTGCCCATATCGTTGTTAGGCTTTTTGATGATGGTAAATTTCATGTTACTGAATTTGAGCCTGAGCATAACCATGACTTGGTGGGGAAGGGCCAGGAAGCTCAGATTGAATTAAGCAATGGGGTGACAGTGGTGAGTAAAGTTGGCAGGAGGAATTTAGGCAGACACATTATAAGGAAGCCAGTCATTGCGAATTTCATGTCATCAAAATGTGTGGATCCTTCAATGTTGGGATCAGATATGTCTCTACTGACAGAAGATAATTCTGATAATGATAATTGGGTACCTAAAGTTGATATGGAGTTTGAGGATGATGACGAGGCATATGAGTTTTACATTAACTATGCTGCCAGAACAGGTTTTAGTGTTCGGAAGAATCAACTGAGGCGGAGAACCTCTGGCCTAGTGTATTCAAGAACGTATTCTTGTCACAAAGAGGGCCAAAGCAGGAAGAATACCGAGCATGAGAAGAGGGGTGATAAGTTAGTGAGGGGTCCGAAACCATATGAGAGAACAGGTTGTCTTGCATCTATGACCATTAAAATTATGAAGAATGGCAGGTATCGTGTCATGGAGTTTGAGCCAAAGCATAATCACTCCCTCCTAATTCCATCAAAGTCGCACTTGTTCATGTGGCGCTTGCAGAGGGGTCTACTCGGGACTAGGGCTAATTTAACTGAATTGGAAGGTGATAAAGGAATGCCAATGGAGCCTTTTGATGGGAAGAAGAATGAACAAGATGGAAGTGACACGATCTTTCCCCTTATGTCTATTGATTGTAGGAACTATATTCCATTGAAACGTGAGTATGAAACCCTTCCGGGGGATGTAGGAGCTTTGATGCAATATGTGCAAGAAAAACAGGTCGAAGATCCATCCTTCTATTATGCAATTCTGCTGGATCGATATGATGAAGTAGCATGCTTCTTTTGGGCTGATGCAAAATCCATGTTCGACTTTGAATGCTTTGGTGATGTACTTTGCTTTGATACAACATACAAATCTAGGGATTATGATCGACCATTTTCGCCATTTCTTGGTGTGAACAACCATAAGCAGACGGTTATTTTCGGTGCTGCATTGCTCTATGATGATACAAAAGAGACTTTTGAATGGCTATTTGAGACTTTCAAGACTGCAATGTCAGAGAGGAAACCAAATGCTGTCTTTACAGATAGATCTGAAGCCATGAAGGCCGCAATAGCTGATATTTGGCCAGGAGCAGTTCATCGAGTCTGTGCTTGGCACATCTATAACGATACCTTGAAGCATCTAAATCATGTATTTCAAGGTTCAACAACATTTGCCAAGGATTTTAGTCGGTGTATATATGATATTGAGAATGAAGAGGATTTTATGTCCGAATGGAAAATTTTATTAGGTAAATATGATCTCGTCAACAATTCTTGGTTGGCTGAGCTCTATGATGACAGAGAGAAGTGGTCTTTGGCATTCAGTCGACAAGCATTTTGTGCGGACATAAACAGCACGCTTGTAAAAGAAAATATGGGAAATATGCTAAAATCTTACTTAAATTTTGATCAGAATCTCTTGGACTTCTTCAAGAGCTTTGAGAGTATGTCGAATGAGAAACGTAGTGCGGAGCTGCAAGCCGATTACCGTGGTTTTCATAGTTCTGTAAAGGTACCTGCTTCAAAGATGTTGAGGCAAGCGGCAAATGTGTACACCCCAGCAGTTTTTAAGACATTCCAAAATGAGTTCGAACTGTCCATGGACATGATGGTATACCATGGTGGCCAGACTCATACCACATATTCATATAAAGTTACAGCAGATGATAGCCCTAAAGAGTATATTGTAAGATGTGACGCTTCAGATAATACTTGCATCTGCAGTTGTAACAAATTTGAATGCATCGGCATTCAATGCCGCCATGTTTTGAAAGTCTTGGACATCATAAATATTAAGGAGCTCCCTCCTCAGTATCTGTTGAAAAGGTGGAGAAAAGATGCTAGGAGCAAGTACCTGGAATGTATTCAAGAAATTGAAGTGGAAAATGAAAATGCAGCGTCACTCAGAGAGCGCTGTAGCCGTTTGCGCAGCATTTGTAATAGAATTGCCGTACGGGCTGCAGAAACCTTGGATTCTTATGCATTCATCGAAAGTTTATCAAATGAAGTCATGGATCAAATGTACAACATTATGATGAGAAAACCACCTGAAAGGCATTAATCTAATTGGTTTCATTGATACTGACTGGAGGGAAATTTTTTTGGTTCCCCGGCTCTTAATGTGGGCAGCTTTTTATTGCATCCCTTTAAACTAATTCAAAATTATTACCAAGGTTTCTCCTGCCATATGTGGTGACCTTAGTACTATTAACTTGAGGATGCAGTCAAAATATTTCATCAAGTTAAAGCCTAGTATTCACAATCATAAATTTCTCCTACATTATGGACTAGATGGTAACTTGCTGAGCACTTTTATAAGCTAGTAATTGAAGTTGAAAAACAAGGAAAACTATCAGCTTCTTTAGTGAGGTTTAGAGGAGCATCATTGGGTGGAGACTTTAATCTAATCTCTTTATTACTGATGTTTCTAAGTTCAGCTTGTACGTCATTGCTTGTTGTAGTACTTCTTACATTATTGTAAAGCCCTGTATTATATTTCATTGTACTAAAGTGTGAATATTATTTGTTGTGAGAGATATATAGCGTACAAAGAAACATGAAAGTAAAATGTGAGAATTTTATGTGAATGCGTGAGGTTTATTTTTATTCGAGATCACGCATACACAATAGTTTAGTCATAAATTCAACCTGCAATATTTGTTAGCTCATATATTTTTCCTTTTACTCACTAGAATTATCTGTCTTTAAATGTTTTACTATTGTTATGCTTATCGATTA

Network for GWHGAAEX000988

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03101.14	FAR1	174	258	3.60E-22
PF03101.14	FAR1	340	432	4.10E-21
PF10551.8	MULE	556	649	3.00E-27
PF04434.16	SWIM	824	868	0.00087

Protein Sequence

>GWHPAAEX000988
VEISSIYTNLEEFIQGKVEHPKTPILRSPNVSNIHCGRTRPIFSELPFLADPSKLGRSIRSRSYSLPPTFFRMFKRIRFPLSLNLCLPCRFRLHSRVFSVPRNFCHTLHEELVLAFRNKCKVVIFCSETIRARSGEMSQTAEESRDGSSCADASDESWVPKLDMVFESDEKAYQFYCLYAREIGFGVRKNVVKRRANNSVYSRGFCCYKEGFCRTMKEGKKPRSDVRTGCGAHIVVRLFDDGKFHVTEFEPEHNHDLVGKGQEAQIELSNGVTVVSKVGRRNLGRHIIRKPVIANFMSSKCVDPSMLGSDMSLLTEDNSDNDNWVPKVDMEFEDDDEAYEFYINYAARTGFSVRKNQLRRRTSGLVYSRTYSCHKEGQSRKNTEHEKRGDKLVRGPKPYERTGCLASMTIKIMKNGRYRVMEFEPKHNHSLLIPSKSHLFMWRLQRGLLGTRANLTELEGDKGMPMEPFDGKKNEQDGSDTIFPLMSIDCRNYIPLKREYETLPGDVGALMQYVQEKQVEDPSFYYAILLDRYDEVACFFWADAKSMFDFECFGDVLCFDTTYKSRDYDRPFSPFLGVNNHKQTVIFGAALLYDDTKETFEWLFETFKTAMSERKPNAVFTDRSEAMKAAIADIWPGAVHRVCAWHIYNDTLKHLNHVFQGSTTFAKDFSRCIYDIENEEDFMSEWKILLGKYDLVNNSWLAELYDDREKWSLAFSRQAFCADINSTLVKENMGNMLKSYLNFDQNLLDFFKSFESMSNEKRSAELQADYRGFHSSVKVPASKMLRQAANVYTPAVFKTFQNEFELSMDMMVYHGGQTHTTYSYKVTADDSPKEYIVRCDASDNTCICSCNKFECIGIQCRHVLKVLDIINIKELPPQYLLKRWRKDARSKYLECIQEIEVENENAASLRERCSRLRSICNRIAVRAAETLDSYAFIESLSNEVMDQMYNIMMRKPPERHSNWFHYLEGNFFGSPALNVGSFLLHPFKLIQNYYQGFSCHMWPYYLEDAVKIFHQVKAYSQSISPTLWTRWLAEHFYKLVIEVEKQGKLSASLVRFRGASLGGDFNLISLLLMFLSSACTSLLVVVLLTLLSPVLYFIVLKCEYYLLEIYSVQRNMKVKCENFMMREVYFYSRSRIHNSLVINSTCNICLIYFSFYSLELSVFKCFTIVMLID

Gene family

Gene family	subfamily
Transcription Factors Family	FAR1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008270	Molecular Function	zinc ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	5.190
SRP064423	SRR2545915	Juvenile tuber	3.150
SRP108465	SRR5643513	five period of Gastrodia elata	5.170
	SRR5643514	five period of Gastrodia elata	3.070
	SRR5643515	five period of Gastrodia elata	4.710
	SRR5643524	five period of Gastrodia elata	3.920
	SRR5643525	five period of Gastrodia elata	5.940
	SRR5643528	five period of Gastrodia elata	5.420
	SRR5643658	five period of Gastrodia elata	4.870
	SRR5643659	five period of Gastrodia elata	4.000
	SRR5643660	five period of Gastrodia elata	3.540
	SRR5643661	five period of Gastrodia elata	3.370
	SRR5643662	five period of Gastrodia elata	3.400
	SRR5643663	five period of Gastrodia elata	2.740
	SRR5643664	five period of Gastrodia elata	2.930
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.580
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.610
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.130
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.840
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.660
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.770
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.970
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.280
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.160
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.010
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.270
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.270
SRP279888	Gastro	Gastrodia elata tuber	2.69
	Juven	Juvenile tuber	3.42
	Mother_Gastro	Mother tuber of Gastrodia elata	7.13
	Mother_Juven	Mother tuber of Juvenile	5.33