Gene detail

Detail information of GWHGAAEX000989/evm.TU.scaffold_103.99

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|78045069\|ref\|YP_361350.1\|	3.00E-119	serine hydroxymethyltransferase [Carboxydothermus hydrogenoformans Z-2901]
KOG	KOG2467	0	Glycine/serine hydroxymethyltransferase
nr	gi\|672116803\|ref\|XP_008781572.1\|	0	PREDICTED: serine hydroxymethyltransferase 7 [Phoenix dactylifera]
Swissprot	tr\|Q84WV0\|GLYC7_ARATH	0	Serine hydroxymethyltransferase 7
trEMBL	tr\|M0T7X3\|M0T7X3_MUSAM	0	Serine hydroxymethyltransferase {ECO:0000256\|RuleBase:RU000585}
TAIR	AT1G36370	0	serine hydroxymethyltransferase 7

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000104	3798860	3819480	-

Transcript Sequence
>GWHTAAEX000989 AAATAGCCCCGTCAAAATTTAGTTGTTACGTAGTAAAAATTTTCTTGCAGTTTCTAGCGGACGGAGAGAGGGGTGAATTAGGTTTGTTCTTCTATTCTGAAGCTGTCAAATTAGATATCCTAGCTAGGGTTTGCTTCTCCTCTCCAGATCATTCGCCAGCGTTATCCCGTTTTTGTTCACCTCTATCACCACTACTTTTGCTGCTTCTACCACGCCAATTTGTAGTTGTTGGTCTATTTCATGGATCTTTCCCACTCTCATTCCGGCCTTTCACTGGGATTCTACTCTCATCGATCCGCGGTTCCCGACGACTCCGCTTCGCTGCAGACCGATGCGAGTCTCCGTGAAGAATCCCGCGGAGCTCGGCCACTTGCGCTTCAGCTTCTCGATCAGCAATCAGAGACTCACCGGGGCGGCTCCGTTGGAATAGACGATGGCGAGGATTCTGATAATGGGCAGAGGGACGAGGAATTTAGTCTACTGGGATACCCGATGTGCCTCAAGCGCCAACGGAGAGGGGAGTCTTTGTCTTCATGCTCTTCTTCATCTTCCCTTCACCCCTCCAAGCGAAAAGCCGTGGAGCCGGATCTCGAGACACGGAAGGCCACTGTTCAAGCTTGGGGAAATCAGGCTTTGTCCGTAGCAGATCCAGATCTGTATGAGATCATGGAGAAGGAGAGGCAGAGACAGATCAAAGGGATCGAGCTCATTGCCTCAGAGAATTTCGTTTGTCAAGCTGTTATCGATGCCCTTGGGAGCCACTTGACCAACAAGTACTCCGAGGGGGCGCCGGGTGCCAGATACTATGGGGGTAATCAATACATTGACCAAGTGGAAAGGCTTTGCTGTGAGCGAGCTTTGACTGCATTTGATCTTGATTCTGAGTGCTGGGGTGTAAATGTTCAACCTTATTCATGTACATCTGCAAACTTTGCAGTTTATACTGGGCTTTTGCAGCCGAAAGATAGAATTATGGGGTTGGATTCTTTATCAGGCGGACATGTGAGTCATGGATACTTGACTCCTAGTGGGAAAAGGATATCAGGGGCTTCTATATTCTTTGAGAGTTTGTCATATAAGGTGAATCCTCACACTGGCTACATTGATTATGATAAGGTTGAGGAGAGGGCTATGGATTTCCATCCAAAGATCTTAATTTGCGGGGGCAGCTCATACCCAAGAGAGTGGGATTATGGAAGGTTTAGACAGATAGCCGACAAGTGTGGTGCTGCACTGATGTGTGACATGGCTCATATTAGTGGGCTTGTGGCCGCTAAGGAATGTTCAAGTCCATTTGATTATTGTGATATCGTTACTTCAACAACGCATAAAAGCCTTCGTGGTCCGAGGGGTGGTATAATATTTTATAGGAAAGGAAAGAAGCTCAGGAAGCGTGGATTTTCTGCATGTCAGGCAAATGAAAATGATCAGTATGATTTGGAGGATAAGATAAACTTTGCTGTTTTCCCGTCAATGCAAGGTGGACCACATAATAACCATATTGCTGCTCTTGCAATTGCACTGAAACAAGTAGCTACTCCTGAATATAAAGCATATATCCAGCAAGTTAAGAAAAATATTCAGGCCTTAGCCTCTTCTTTACTCAGGCAAAAATGTAGGTTGGTTACTGGGGGTACAGACAACCATCTCTTACTTTGGGATCTAAGAACCTTTGGATTGACAGGGAAGACCTTTGAAAAAATATGCGAGGCATGCCATATCAGCCTTAACAAAACTCCCATATTCGGTGATAACGGCACCATCTGCCCTGCCGGAGTCCGGATAGGTGCACCTGCAATGACAACAAGAGGGTGCTTGGAGGGGGACTTTGAGGCAATGGCTGGGTTCCTCATCAGGGCCGCGCTCATTGCAAGCAATCTTCAAAGGGAGCAGCAGCAGCAGCAACACCACGGAAAGATTCACGACATCTGCAAAGCCCTCAACAATAGCAAAGAGATAGCAGACCTGCGAGCCCAGGTTGAATCTTTTGCCTCTCAGTTCGCAATGCCTGGCTCCGATGTTTGATGCACACCGCGACTGGGCACTGGCTACCTTCGTTAAAGAATTTTCGGAACTGTGCCACTTGCCGCCCATCCATCTATCCATCCAATGGTTCTGATAAAATCTCATTCAATACTGGTTCAGAGTTGTTTGGAGCAGTTGATCCAGTGGAAGGCTTGCCATTGGAGGAGGAGCGTGCACTTGAAGATCCTTAGACTTAGCTTCTTTTCATTTCCTGTATTGTGAGGCTGAGTGTTATTTTCAGTTTTTATAAACTGCTTTAAATGTTGTAATATTACAAGTTAAATCTTTATTTCCTGCACTTTACTTATTCTAAGATGTATTTATATATAATGG

Network for GWHGAAEX000989

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00464.18	SHMT	133	536	1.10E-166

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00600	glyA, SHMT	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Biosynthesis of antibiotics	map01130
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Glyoxylate and dicarboxylate metabolism	map00630
		Methane metabolism	map00680
		Pyrimidine metabolism	map00240
		Cyanoamino acid metabolism	map00460
		One carbon pool by folate	map00670

Gene Ontology

GO term	Ontology	Name
GO:0019264	Biological Process	glycine biosynthetic process from serine
GO:0035999	Biological Process	tetrahydrofolate interconversion
GO:0005515	Molecular Function	protein binding
GO:0030170	Molecular Function	pyridoxal phosphate binding
GO:0004372	Molecular Function	glycine hydroxymethyltransferase activity
GO:0003824	Molecular Function	catalytic activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	34.960
SRP064423	SRR2545915	Juvenile tuber	34.240
SRP108465	SRR5643513	five period of Gastrodia elata	35.600
	SRR5643514	five period of Gastrodia elata	33.320
	SRR5643515	five period of Gastrodia elata	41.240
	SRR5643524	five period of Gastrodia elata	35.890
	SRR5643525	five period of Gastrodia elata	49.590
	SRR5643528	five period of Gastrodia elata	49.840
	SRR5643658	five period of Gastrodia elata	46.000
	SRR5643659	five period of Gastrodia elata	46.440
	SRR5643660	five period of Gastrodia elata	45.370
	SRR5643661	five period of Gastrodia elata	44.800
	SRR5643662	five period of Gastrodia elata	55.440
	SRR5643663	five period of Gastrodia elata	44.650
	SRR5643664	five period of Gastrodia elata	50.140
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	41.190
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	33.250
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	36.380
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	40.660
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	43.800
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	53.740
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	41.270
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	44.900
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	38.420
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	41.560
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	38.240
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	38.240
SRP279888	Gastro	Gastrodia elata tuber	42.85
	Juven	Juvenile tuber	44.66
	Mother_Gastro	Mother tuber of Gastrodia elata	66.68
	Mother_Juven	Mother tuber of Juvenile	91.21