Detail information of GWHGAAEX000990/evm.TU.scaffold_104.1
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|55376617|ref|YP_134468.1| | 2.00E-90 | metabolite transport protein [Haloarcula marismortui ATCC 43049] |
| KOG | KOG0254 | 0 | Predicted transporter (major facilitator superfamily) |
| nr | gi|672114713|ref|XP_008778282.1| | 0 | PREDICTED: probable polyol transporter 4 [Phoenix dactylifera] |
| Swissprot | tr|Q0WUU6|PLT4_ARATH | 0 | Probable polyol transporter 4 |
| trEMBL | tr|W9RIK5|W9RIK5_9ROSA | 0 | Putative polyol transporter 4 {ECO:0000313|EMBL:EXB79640.1} |
| TAIR | AT2G20780 | 0 | Major facilitator superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000103 | 23346 | 30162 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000990
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00083.23 | Sugar_tr | 60 | 508 | 3.50E-107 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0022857 | Molecular Function | transmembrane transporter activity |
| GO:0016021 | Cellular Component | integral component of membrane |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 14.530 |
| SRR2545915 | Juvenile tuber | 8.670 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 12.860 |
| SRR5643514 | five period of Gastrodia elata | 11.610 | |
| SRR5643515 | five period of Gastrodia elata | 10.960 | |
| SRR5643524 | five period of Gastrodia elata | 10.260 | |
| SRR5643525 | five period of Gastrodia elata | 5.260 | |
| SRR5643528 | five period of Gastrodia elata | 7.280 | |
| SRR5643658 | five period of Gastrodia elata | 6.620 | |
| SRR5643659 | five period of Gastrodia elata | 14.250 | |
| SRR5643660 | five period of Gastrodia elata | 13.210 | |
| SRR5643661 | five period of Gastrodia elata | 12.600 | |
| SRR5643662 | five period of Gastrodia elata | 13.210 | |
| SRR5643663 | five period of Gastrodia elata | 12.510 | |
| SRR5643664 | five period of Gastrodia elata | 12.720 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 12.200 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 10.150 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 13.900 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 11.100 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 13.310 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 12.350 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 13.400 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 12.690 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 15.660 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 14.020 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 16.470 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 16.470 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 10.79 |
| Juven | Juvenile tuber | 14.12 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 10.14 | |
| Mother_Juven | Mother tuber of Juvenile | 12.50 |