Detail information of GWHGAAEX000992/evm.TU.scaffold_104.3
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1928 | 3.00E-97 | Alpha-1,4-N-acetylglucosaminyltransferase |
| nr | gi|743834821|ref|XP_010935632.1| | 6.38E-123 | PREDICTED: lactosylceramide 4-alpha-galactosyltransferase-like isoform X1 [Elaeis guineensis] |
| Swissprot | tr|P0C8Q4|Y4990_ARATH | 3.00E-33 | Uncharacterized protein At4g19900 |
| trEMBL | tr|M0S3Z4|M0S3Z4_MUSAM | 3.00E-112 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P00530_001} |
| TAIR | AT1G61050 | 3.00E-97 | alpha 1,4-glycosyltransferase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000103 | 71553 | 73422 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000992
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04488.14 | Gly_transf_sug | 94 | 215 | 3.30E-19 |
| PF04572.11 | Gb3_synth | 232 | 357 | 4.50E-28 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT32 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01988 | A4GALT | Metabolic pathways | map01100 |
| Glycosphingolipid biosynthesis - lacto and neolacto series | map00601 | ||
| Glycosphingolipid biosynthesis - globo and isoglobo series | map00603 |
Gene Ontology
| GO term | Ontology | Name |
|---|
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.580 |
| SRR2545915 | Juvenile tuber | 1.210 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.930 |
| SRR5643514 | five period of Gastrodia elata | 4.790 | |
| SRR5643515 | five period of Gastrodia elata | 4.950 | |
| SRR5643524 | five period of Gastrodia elata | 5.220 | |
| SRR5643525 | five period of Gastrodia elata | 1.960 | |
| SRR5643528 | five period of Gastrodia elata | 2.570 | |
| SRR5643658 | five period of Gastrodia elata | 0.450 | |
| SRR5643659 | five period of Gastrodia elata | 0.770 | |
| SRR5643660 | five period of Gastrodia elata | 0.910 | |
| SRR5643661 | five period of Gastrodia elata | 1.040 | |
| SRR5643662 | five period of Gastrodia elata | 0.830 | |
| SRR5643663 | five period of Gastrodia elata | 0.750 | |
| SRR5643664 | five period of Gastrodia elata | 1.090 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.380 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.920 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.640 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.260 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 5.230 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.670 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.660 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.850 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 8.760 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.480 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.220 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.220 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.08 |
| Juven | Juvenile tuber | 1.33 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 33.95 | |
| Mother_Juven | Mother tuber of Juvenile | 27.28 |