Detail information of GWHGAAEX000994/evm.TU.scaffold_104.7


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG10391.00E-117Predicted E3 ubiquitin ligase
nrgi|672114731|ref|XP_008778372.1|1.99E-153PREDICTED: uncharacterized protein LOC103698155 isoform X2 [Phoenix dactylifera]
trEMBLtr|W9RNK9|W9RNK9_9ROSA5.00E-150RING finger protein 141 {ECO:0000313|EMBL:EXB82785.1}
TAIRAT5G015201.00E-117RING/U-box superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000103180105204604+
Transcript Sequence

Network for GWHGAAEX000994

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module1

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13920.5zf-C3HC4_31461913.80E-08
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms65.340
SRR2545915Juvenile tuber58.760
SRP108465SRR5643513five period of Gastrodia elata48.590
SRR5643514five period of Gastrodia elata49.240
SRR5643515five period of Gastrodia elata39.010
SRR5643524five period of Gastrodia elata55.640
SRR5643525five period of Gastrodia elata178.980
SRR5643528five period of Gastrodia elata95.660
SRR5643658five period of Gastrodia elata157.450
SRR5643659five period of Gastrodia elata34.510
SRR5643660five period of Gastrodia elata41.880
SRR5643661five period of Gastrodia elata35.280
SRR5643662five period of Gastrodia elata41.720
SRR5643663five period of Gastrodia elata36.690
SRR5643664five period of Gastrodia elata47.800
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_134.040
SRR6049655Rhizomagastrodiae_C368-T10_good_131.200
SRR6049656Rhizomagastrodiae_C368-T07_good_135.740
SRR6049657Rhizomagastrodiae_C368-T07_good_139.500
SRR6049658Rhizomagastrodiae_C368-T04_good_137.410
SRR6049659Rhizomagastrodiae_C368-T04_good_145.240
SRR6049660Rhizomagastrodiae_C368-T01_good_129.890
SRR6049661Rhizomagastrodiae_C368-T04_good_133.880
SRR6049662Rhizomagastrodiae_C368-T01_good_118.800
SRR6049663Rhizomagastrodiae_C368-T01_good_123.490
SRR6049664Rhizomagastrodiae_C368-T10_good_127.560
SRR6049665Rhizomagastrodiae_C368-T10_good_127.560
SRP279888GastroGastrodia elata tuber 40.73
JuvenJuvenile tuber34.79
Mother_GastroMother tuber of Gastrodia elata 76.88
Mother_JuvenMother tuber of Juvenile 62.72