Gene detail

Detail information of GWHGAAEX001004/evm.TU.scaffold_104.16

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|325108064\|ref\|YP_004269132.1\|	3.00E-24	serine/threonine protein kinase [Planctomyces brasiliensis DSM 5305]
KOG	KOG1187	1.00E-153	Serine/threonine protein kinase
nr	gi\|743835684\|ref\|XP_010935886.1\|	0	PREDICTED: receptor-like serine/threonine-protein kinase NCRK isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q8VYY5\|NCRK_ARATH	8.00E-158	Receptor-like serine/threonine-protein kinase NCRK (Precursor)
trEMBL	tr\|M0TD93\|M0TD93_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P36510_001}
TAIR	AT2G28250	1.00E-153	Protein kinase superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000103	401317	436990	-

Transcript Sequence
>GWHTAAEX001004 TTGTTCGATTTATATTATTTGTTTAGTATGGGTTAAAGGGAATCCATTTCCGCAGTTGAAAGCAAAGTTTTGTTTTGAGCTCAGTTGGCCATCAATCACTGATTCTGTGTTTCGAACGTGCGATTATTTCAGAACTTCAATGTTCCAATCTTCTGCCTACGCAAGATTGAATTTAGTGGACATAAATGTTTCTGTCTTCTTTCTGCGCAAGTTTGAATTTGGCTTCTTTCTCTGTTGCTTCTGTTGTTTGATTAGGAGCAGAAGAGCTAATGAACTAAACCTTGCACCCAATAAGAAGAAAAGCAGTATCTCCAGATCTCAAAAAAGGAGCTGGATTGCGTTTCCCTCCTTTCCCAGCTGTTGCTATTAAATATTCTTATTTGATTATATACCGGTGGGAAGTCTCCTTCAGGTTTTGTGGTGAAATTGTCCTGTCACCGCTAATACGGTCGTGTGATTTGTCTGTTCATAAAAAATACAGTTTATCCTCTGGCATCATCATGTTTACTGGCTTAAGATTTCTTCCTTATTCCTTAGTTTTGGTCGATGTCCATTTTCGTAGTTCAAATCGGATTTTTCTTGCGTTTTTACTGTGAATTTGGTTGGCACGCAGAGCATCGAGATGTTGCGCGCAAGATATTTGTGCTAATACGTCAAAGAAGAATTAGTGTTATTGCTTTAATGGGAAGATAGCTGTCCATATATTTTCAGAAGGTTCAGCCTGCAGAGAATGGATGCATTATGTTCTTAGCTAAGCGCACGAGCTTGTCGCAAAGGCCATTTAGGGAACCATCAGCCTCTATGCTTTGTGGGCAATTGCCAGCTGAATTTGATGGGGTTGCATATGAAAGTGGTTTCCATTTGCTTCAGCGGGCTACTGTACTTGAATTTCATTTACGGTGAAATGATCCAAAATGTACTAGAAGAAGTGAAATGGGAATGCAATTGTGCTGCTAACCACCTTGCAGAGCTCAATTCCACTGGCGCATATAATTGTTCTTCATCATGTCATTGCATACCAGCAGGTGAACTAGAAGTGCGAGATGGTGTCAACTGGAATTGTTCTTGTGCATCTTCCGCTACTCCTCAATCCAGTGATAACATCCACATATCCGGCTGCTTTACATCGTGTAACTGTACTTTTGGTTCAATTGAAGCTTCAGCAGCACAAAAGCGCATCACTATGAAGGGCGTTGTTGCCATTCTTGTAGTCTGTATTGTGGTCATATCAATATTATTTGTCTCAGTTGCATTTCATTGCTACCGAAAGGACAAGCTATCCCTCCAACGGCATATATTTTCATCTACAAGGGACACAAGCTACAACAGTTCAGTAAACTTACTAAGCTATCGATCTGCTTCATTTTTACATTGCCAGCACAAGGCTGATACCCTTCTCTGTCCTTTCACAGAATTTCTTCGTAGGATTTCTGTCATATTTAGAGGGGAGAAGCAAACGATACCTGGAGCAACAACCCAGTTTTCGTTTTATGAACTCGAACAAGCAACTGCTAGATTCTCTGATTCAAACCTTATTGGACAAGGCACAAGCAGCAATGTGTTCCGTGGTAAACTTTTTGATTCAAGAATTGTTGCGATTAAAAAACTGAAAGCGCTAAGTGTGACAGAAGCTGAATCTGACTTTTTAACTGAGATTGAATTAATATCAAGGCTCAACCACTGTCATGTTGTACCCTTACTTGGATATTGTTGCGAATATCAAAATAGAAATTATGAGAGGCTTCTTGTATTTGAGTACATGTCGAATGGTAATTTACGAGAATGTTTGGATGCTAAGCGTGGTAAAGAATCCTTGAGTTGGGCTACTCGTGTTCATATTGCTTTAGGAGTTGCAAGAGGCTTGGAATATTTACATGAAGCAGCTGCCCCAAGAATATTGCATCGGGACATCAAATCCACCAACATCCTCTTAGATGAAAATTATAAGCCAAAGATTACTGATCTTGGAATGGCCAAGTATTTAATGGCTGATGATAACCCAAGCTGTTCTAATTCTCCAGCAAGAATGTTGGGAACATTTGGATATTTTGCACCTGAATATGCTATTGTGGGAAAGGCTTCATTAAAGTCTGATGTTTTTAGTTACGGTGTAGTTATACTAGAGCTGATCACAGGGCGGCAACCAATACAAAAATCAGCTAAAGGTGATGAAAGTCTTGTGATATGGGCAATAACTCGATTGCATGATAGTAAACTGGTTGTGGCAGAATTACCCGACCCTCTTCTACAAGGAAAATTCCCCGATGAAGAGATGCAGATAATGGCTCATTTAGCCAGAGAATGTCTCTTGTGGGACCCAGATTTGCGACCAACAATGACAGAAATTGTTCAGATCCTCACCACAATTACTCCAGAAAAGTATTGGCGGAGGAATTTCTATGAAAGCTTCCATATGGAAAACAAAACTGCTTCAGAAAAACCGCAGGACTGCTCAACTGAAGTGGGGGGAGAAGAAGATCCAGAAAGAGCGCAGAGCTCATTGACCGAGCTCATAAATCAAGAGAAATTAGAGAGAGCTCTTCTCAATTTGCATCTGCCTTCAGCAGATGATCTGAAGCTCTGTGAGGAGAAGAAGAAGGGAGAATGTCAGGGGTCTGTTCTTTCAACTGAACGCATGCAAGAGCTTGTGTTCTTAGCTTCTGCTGCTCAGAGCAGGCAATCCTCGGAAGAATATGTGGATCTCACAGAACCCCGTTTTGAGCTTTTCCTATGATTGAGGTTTCTTTGCCAACCAAGTATTAATTTTTAAAAATTAAAAAATCGGAACCGTACGTAGCATCCATCTAATGGTTCAGATTTTTTTTTACCATAATTAGGATGTAATGGCGTGCTTTTTATTAATCTAGAATTTTTTTTATTATATCTCAAAGATAAATTAGATCATTATTTTGAATAATTTTATAATTTTTGGATGATTAAACAAAATTAAAGGATTCGGCACTTAAATTGTTTATGATTATAAAGAAGC

Network for GWHGAAEX001004

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.24	Pkinase	230	507	5.10E-48

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-XVI

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0005524	Molecular Function	ATP binding
GO:0004672	Molecular Function	protein kinase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	20.750
SRP064423	SRR2545915	Juvenile tuber	16.190
SRP108465	SRR5643513	five period of Gastrodia elata	15.970
	SRR5643514	five period of Gastrodia elata	27.030
	SRR5643515	five period of Gastrodia elata	17.560
	SRR5643524	five period of Gastrodia elata	23.060
	SRR5643525	five period of Gastrodia elata	18.690
	SRR5643528	five period of Gastrodia elata	18.030
	SRR5643658	five period of Gastrodia elata	29.350
	SRR5643659	five period of Gastrodia elata	13.550
	SRR5643660	five period of Gastrodia elata	11.360
	SRR5643661	five period of Gastrodia elata	9.520
	SRR5643662	five period of Gastrodia elata	7.950
	SRR5643663	five period of Gastrodia elata	12.190
	SRR5643664	five period of Gastrodia elata	7.220
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	18.720
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	20.640
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	24.370
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	21.990
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	18.460
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	18.110
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	25.260
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	18.610
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	27.700
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	33.570
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	21.700
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	21.700
SRP279888	Gastro	Gastrodia elata tuber	8.33
	Juven	Juvenile tuber	22.84
	Mother_Gastro	Mother tuber of Gastrodia elata	4.50
	Mother_Juven	Mother tuber of Juvenile	5.68