Gene detail

Detail information of GWHGAAEX001007/evm.TU.scaffold_104.18

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|296132950\|ref\|YP_003640197.1\|	2.00E-86	DEAD/DEAH box helicase [Thermincola potens JR]
KOG	KOG0326	0	ATP-dependent RNA helicase
nr	gi\|719998572\|ref\|XP_010255444.1\|	0	PREDICTED: DEAD-box ATP-dependent RNA helicase 8-like [Nelumbo nucifera]
Swissprot	tr\|Q7XMK8\|RH6_ORYSJ	0	DEAD-box ATP-dependent RNA helicase 6
trEMBL	tr\|M0RVT0\|M0RVT0_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P00220_001}
TAIR	AT4G00660	0	RNAhelicase-like 8

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000103	455246	487615	+

Transcript Sequence
>GWHTAAEX001007 TGTATTTTTGAGTCTGAGGTGTTTGCATGAACTTCAGCGAAACAATTGAAAATGGATTAAGGGCTTTACGGTCATTCTCTCATTGCATGCGATTCTTCTTACTTGGATACCCTAGGCCACGACTCTCCGGTTTTCTCTACTTCGTCGGTCTTGCATCGGAGACAGGTATTGGAGTTTTATCTCTTAGAACCTCCAGCGATTACTCTCATCGCACTTTCAAAGTTGAATTATTGTTCCCGATGCTCACCCAGATAGCCAACTTTTCGTAGTTTCGTCTGTTAGCTTCCCGAGAACATGGATTGACTCAGTGCTGCTAAATTCTACACCTTGATCTGGCATGAGATCTTTTTTTTCTAGGTCAAGATCAGTGTTTTTGTAATTTTGAGGGTTGATTTTATTTAGTCATTGGATGAATCCTCGCGAGAGGTATCTTCCCGGAATCGGCAATGGCCGTGGGGGAAACATGGCGCAGAGTTCTAATTTTTATGCAAGAGGGTCTCAGATGCTGCCACAGTCGCAGCCGCAGCAGCAGCCACATCCGCAGCAGCAGTACGCGCAGAGGAACGTTCTGCCTATCCAGCATGGCCAACAGTTGCAGCAGCAATGGGCGCGGAGGAATGAGATGGGAGTCGATTCAGGAAACCAAGAGGTAGTTGGAGGAGGTCACTCAGATGGTGTCAATTCTAGCTCTCAAGATTGGAAATCACATTTAAAGATACCGGCACCTGATACTCGTTATCAAACTGAGGATGTTACTGCAACGAAAGGAAATGAATTTGAAGATTATTTCTTGAAGAGAGAGTTGCTCATGGGTATATATGAGAAGGGATTTGAAAGGCCGTCTCCCATTCAAGAGGAAAGTATTCCAATTGCACTCACCGGTAGTGATATTCTTGCTAGAGCAAAAAATGGAACTGGGAAAACAGCTGCCTTTTGTATTCCTGCATTGGAGAAGATAGATCAAGAAAAGAATGCCATTCAAGTGGTTATACTTGTTCCTACACGGGAATTAGCTCTGCAGACATCACAAGTTTGCAAGGAACTTGGAAAGTACTTGAAGATTCAGGTTATGGTCACCACAGGAGGAACGAGTTTAAAGGATGACATCATGAGGTTATATCAGCCGGTTCATTTACTTGTTGGGACGCCTGGACGCATACTTGATCTTGCTAAAAAGGGTGTTTGTGTTCTCAAGAATTGCTCCGTGCTCATTATGGATGAGGCGGACAAACTTCTGTCTCCAGAATTTCAACCTTCAATTGAGCAATTGATTCGTTTTCTTCCTGCAAACAGGCAAATTTTGTTGTTTTCAGCAACTTTTCCTGTGACTGTTAAGGATTTTAAAGACAGATATTTACCAAAGCCTTATGTTATTAATCTTATGGATGAGCTTACCCTTAAGGGTATTACGCAGTATTATGCTTTTGTTGAAGAAAGACAAAAGGTTCACTGTCTGAATACCCTTTTCTCCAAGCTACAAATAAACCAGTCTATCATATTTTGCAACTCTGTTAATCGGGTTGAACTGCTGGCAAAGAAAATTACAGAGCTTGGATATTCTTGCTTTTATATTCATGCCAAAATGTTGCAGGACCATCGGAATCGTGTTTTCCATGATTTCCGAAATGGTGCATGCAGGAATCTTGTTTGTACTGATCTTTTTACGAGGGGAATTGACATTCAAGCTGTTAATGTTGTTATCAACTTTGATTTTCCCAAGAACTCAGAGACGTATCTACACAGGGTTGGTCGCTCTGGAAGGTATGGACATCTTGGTCTTGCTGTAAATCTAATCACTTATGAGGACCGTTTCAACTTATATAGGATTGAGCAAGAACTAGGAACTGAGATCAAGCAGATTCCGCCACAAATCGACCAGGCTATTTACTGCAGATGATCAATGCAGTCCTTGCTGCATATCTTAATTGACCAATCCACTGGAAATATTTTCATTTTCAATAGCTGTGCATAGGGAGTTTACTGTGATCTTCATTACTCTTCTCAAAGCAAAGCTTTTGGTCCACCTGTTTGTTAGTGCTTTTGCTTGAATATTAGGTTTTAGCTCTCATCTCTCTCTCTCTCTCTCTC

Network for GWHGAAEX001007

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.28	DEAD	146	310	5.80E-46
PF00271.30	Helicase_C	347	453	7.10E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12614	DDX6, RCK, DHH1	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	75.370
SRP064423	SRR2545915	Juvenile tuber	62.030
SRP108465	SRR5643513	five period of Gastrodia elata	42.180
	SRR5643514	five period of Gastrodia elata	41.130
	SRR5643515	five period of Gastrodia elata	41.510
	SRR5643524	five period of Gastrodia elata	39.720
	SRR5643525	five period of Gastrodia elata	42.450
	SRR5643528	five period of Gastrodia elata	48.330
	SRR5643658	five period of Gastrodia elata	40.000
	SRR5643659	five period of Gastrodia elata	43.800
	SRR5643660	five period of Gastrodia elata	39.310
	SRR5643661	five period of Gastrodia elata	34.750
	SRR5643662	five period of Gastrodia elata	41.450
	SRR5643663	five period of Gastrodia elata	37.190
	SRR5643664	five period of Gastrodia elata	36.740
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	46.370
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	48.050
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	53.830
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	47.010
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	59.140
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	58.340
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	55.160
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	57.070
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	60.700
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	64.880
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	56.400
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	56.400
SRP279888	Gastro	Gastrodia elata tuber	46.39
	Juven	Juvenile tuber	30.87
	Mother_Gastro	Mother tuber of Gastrodia elata	48.82
	Mother_Juven	Mother tuber of Juvenile	44.81