Detail information of GWHGAAEX001010/evm.TU.scaffold_104.22
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|146298365|ref|YP_001192956.1| | 3.00E-19 | two component regulator [Flavobacterium johnsoniae UW101] |
| nr | gi|743831619|ref|XP_010934748.1| | 0 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g63430 [Elaeis guineensis] |
| Swissprot | tr|C0LGH8|Y1634_ARATH | 1.00E-179 | Probable LRR receptor-like serine/threonine-protein kinase At1g63430 (Precursor) |
| trEMBL | tr|M0U2X3|M0U2X3_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P23660_001} |
| TAIR | AT1G63430 | 1.00E-173 | Leucine-rich repeat protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000103 | 506278 | 511382 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001010
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 2 | 34 | 3.80E-08 |
| PF07714.16 | Pkinase_Tyr | 342 | 597 | 5.30E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-VI-2 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 25.390 |
| SRR2545915 | Juvenile tuber | 17.610 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.260 |
| SRR5643514 | five period of Gastrodia elata | 9.730 | |
| SRR5643515 | five period of Gastrodia elata | 6.130 | |
| SRR5643524 | five period of Gastrodia elata | 8.810 | |
| SRR5643525 | five period of Gastrodia elata | 7.980 | |
| SRR5643528 | five period of Gastrodia elata | 5.620 | |
| SRR5643658 | five period of Gastrodia elata | 11.430 | |
| SRR5643659 | five period of Gastrodia elata | 8.010 | |
| SRR5643660 | five period of Gastrodia elata | 7.840 | |
| SRR5643661 | five period of Gastrodia elata | 7.660 | |
| SRR5643662 | five period of Gastrodia elata | 10.310 | |
| SRR5643663 | five period of Gastrodia elata | 10.290 | |
| SRR5643664 | five period of Gastrodia elata | 9.120 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 9.430 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 12.790 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 12.220 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 10.080 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 12.610 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 9.260 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 11.120 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 11.770 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 10.580 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 10.010 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 8.440 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 8.440 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 18.29 |
| Juven | Juvenile tuber | 13.39 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 8.61 | |
| Mother_Juven | Mother tuber of Juvenile | 7.22 |