Detail information of GWHGAAEX001012/evm.TU.scaffold_104.25
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1246 | 0 | DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain |
| nr | gi|743831670|ref|XP_010934762.1| | 0 | PREDICTED: lysine-specific demethylase 5D [Elaeis guineensis] |
| Swissprot | tr|C0SUT9|JMJ16_ARATH | 8.00E-93 | Putative lysine-specific demethylase JMJ16 |
| trEMBL | tr|W9QH60|W9QH60_9ROSA | 0 | Lysine-specific demethylase 5A {ECO:0000313|EMBL:EXB37360.1} |
| TAIR | AT1G63490 | 0 | transcription factor jumonji (jmjC) domain-containing protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000103 | 542188 | 644735 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001012
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02375.16 | JmjN | 39 | 72 | 7.00E-17 |
| PF01388.20 | ARID | 114 | 195 | 1.60E-11 |
| PF00628.28 | PHD | 247 | 294 | 9.70E-10 |
| PF02373.21 | JmjC | 418 | 534 | 9.70E-40 |
| PF02928.15 | zf-C5HC2 | 627 | 679 | 7.50E-15 |
| PF08429.10 | PLU-1 | 730 | 900 | 9.30E-07 |
| PF08429.10 | PLU-1 | 989 | 1192 | 1.10E-12 |
| PF00628.28 | PHD | 1712 | 1756 | 5.50E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | ARID |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003677 | Molecular Function | DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 22.250 |
| SRR2545915 | Juvenile tuber | 17.600 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.180 |
| SRR5643514 | five period of Gastrodia elata | 9.890 | |
| SRR5643515 | five period of Gastrodia elata | 10.980 | |
| SRR5643524 | five period of Gastrodia elata | 10.990 | |
| SRR5643525 | five period of Gastrodia elata | 12.290 | |
| SRR5643528 | five period of Gastrodia elata | 10.300 | |
| SRR5643658 | five period of Gastrodia elata | 11.270 | |
| SRR5643659 | five period of Gastrodia elata | 11.270 | |
| SRR5643660 | five period of Gastrodia elata | 11.960 | |
| SRR5643661 | five period of Gastrodia elata | 10.170 | |
| SRR5643662 | five period of Gastrodia elata | 10.270 | |
| SRR5643663 | five period of Gastrodia elata | 10.940 | |
| SRR5643664 | five period of Gastrodia elata | 11.230 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 12.320 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 12.360 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 12.290 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.850 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 14.910 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 15.010 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 13.460 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 14.230 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 12.180 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 13.320 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 11.090 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 11.090 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 14.27 |
| Juven | Juvenile tuber | 19.59 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 20.36 | |
| Mother_Juven | Mother tuber of Juvenile | 25.74 |