Detail information of GWHGAAEX001016/evm.TU.scaffold_104.30


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08008.00E-17FOG: Predicted E3 ubiquitin ligase
nrgi|255556794|ref|XP_002519430.1|1.70E-18RING-H2 finger protein ATL3C, putative [Ricinus communis]
Swissprottr|Q9SJJ7|ATL57_ARATH2.00E-17RING-H2 finger protein ATL57
trEMBLtr|B9S0B1|B9S0B1_RICCO6.00E-19RING-H2 finger protein ATL3C, putative {ECO:0000313|EMBL:EEF42844.1}
TAIRAT2G279408.00E-17RING/U-box superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000103793117794077-
Transcript Sequence

Network for GWHGAAEX001016

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module1

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.5zf-RING_2801231.60E-12
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms10.910
SRR2545915Juvenile tuber30.290
SRP108465SRR5643513five period of Gastrodia elata9.580
SRR5643514five period of Gastrodia elata4.900
SRR5643515five period of Gastrodia elata21.460
SRR5643524five period of Gastrodia elata4.460
SRR5643525five period of Gastrodia elata32.360
SRR5643528five period of Gastrodia elata5.270
SRR5643658five period of Gastrodia elata53.970
SRR5643659five period of Gastrodia elata27.820
SRR5643660five period of Gastrodia elata13.760
SRR5643661five period of Gastrodia elata43.410
SRR5643662five period of Gastrodia elata24.220
SRR5643663five period of Gastrodia elata22.020
SRR5643664five period of Gastrodia elata17.560
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_18.740
SRR6049655Rhizomagastrodiae_C368-T10_good_17.020
SRR6049656Rhizomagastrodiae_C368-T07_good_16.470
SRR6049657Rhizomagastrodiae_C368-T07_good_15.320
SRR6049658Rhizomagastrodiae_C368-T04_good_14.340
SRR6049659Rhizomagastrodiae_C368-T04_good_13.380
SRR6049660Rhizomagastrodiae_C368-T01_good_15.650
SRR6049661Rhizomagastrodiae_C368-T04_good_16.950
SRR6049662Rhizomagastrodiae_C368-T01_good_110.360
SRR6049663Rhizomagastrodiae_C368-T01_good_16.500
SRR6049664Rhizomagastrodiae_C368-T10_good_13.160
SRR6049665Rhizomagastrodiae_C368-T10_good_13.160
SRP279888GastroGastrodia elata tuber 12.71
JuvenJuvenile tuber1.87
Mother_GastroMother tuber of Gastrodia elata 20.45
Mother_JuvenMother tuber of Juvenile 2.48