Detail information of GWHGAAEX001020/evm.TU.scaffold_104.36


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|72162193|ref|YP_289850.1|1.00E-07calcium-binding EF-hand [Thermobifida fusca YX]
KOGKOG00272.00E-29Calmodulin and related proteins (EF-Hand superfamily)
nrgi|672127959|ref|XP_008787459.1|4.57E-35PREDICTED: polcalcin Phl p 7-like [Phoenix dactylifera]
Swissprottr|O82040|POLC7_PHLPR5.00E-32Polcalcin Phl p 7
trEMBLtr|M0SN67|M0SN67_MUSAM2.00E-33Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P12020_001}
TAIRAT5G174802.00E-29pollen calcium-binding protein 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000103910864911307+
Transcript Sequence

Network for GWHGAAEX001020

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module5

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13499.5EF-hand_7731342.40E-15
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13448CML Plant-pathogen interaction map04626

Gene Ontology

GO term OntologyName
GO:0005509Molecular Functioncalcium ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms0.530
SRR2545915Juvenile tuber1.800
SRP108465SRR5643513five period of Gastrodia elata14.540
SRR5643514five period of Gastrodia elata50.510
SRR5643515five period of Gastrodia elata19.950
SRR5643524five period of Gastrodia elata48.000
SRR5643525five period of Gastrodia elata1.460
SRR5643528five period of Gastrodia elata6.150
SRR5643658five period of Gastrodia elata2.690
SRR5643659five period of Gastrodia elata2.280
SRR5643660five period of Gastrodia elata0.560
SRR5643661five period of Gastrodia elata0.000
SRR5643662five period of Gastrodia elata0.000
SRR5643663five period of Gastrodia elata0.210
SRR5643664five period of Gastrodia elata1.310
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_113.320
SRR6049655Rhizomagastrodiae_C368-T10_good_18.850
SRR6049656Rhizomagastrodiae_C368-T07_good_17.690
SRR6049657Rhizomagastrodiae_C368-T07_good_15.550
SRR6049658Rhizomagastrodiae_C368-T04_good_12.240
SRR6049659Rhizomagastrodiae_C368-T04_good_12.630
SRR6049660Rhizomagastrodiae_C368-T01_good_16.550
SRR6049661Rhizomagastrodiae_C368-T04_good_11.400
SRR6049662Rhizomagastrodiae_C368-T01_good_132.640
SRR6049663Rhizomagastrodiae_C368-T01_good_123.490
SRR6049664Rhizomagastrodiae_C368-T10_good_117.860
SRR6049665Rhizomagastrodiae_C368-T10_good_117.860
SRP279888GastroGastrodia elata tuber 0.82
JuvenJuvenile tuber5.42
Mother_GastroMother tuber of Gastrodia elata 9.07
Mother_JuvenMother tuber of Juvenile 6.18