Gene detail

Detail information of GWHGAAEX001023/evm.TU.scaffold_104.39

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743835428\|ref\|XP_010935812.1\|	9.95E-133	PREDICTED: NAC domain-containing protein 78-like isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q84K00\|NAC78_ARATH	1.00E-86	NAC domain-containing protein 78
trEMBL	tr\|R4NHQ2\|R4NHQ2_JATCU	1.00E-91	Uncharacterized protein {ECO:0000313\|EMBL:KDP45077.1}
TAIR	AT5G04410	5.00E-86	NAC domain containing protein 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000103	940195	993151	-

Transcript Sequence
>GWHTAAEX001023 ATCCCATTTGTAAGTGCGTCTGAGTTCTGTCGTTGGTAAGCCGGACTCTCTTTCCAGGAACAGCGTGAAAAGGGGGAGTTTTTTTCTCCTGCACTAGTTGAATCAAACCTCTTCTTTCTGATTTCCCCCTTCCATTGTTCGATGACCAAAGAATCATCTTGCTTCGAAACCCCGACGAAGCCGGTGGTGGCCTCCGCTGAGCTGGCCCCAGGATTTCGCTTCCATCCAACTGACGTGGAGCTTGTTAGCTATTATCTGAAGCGGAAGGTTACCGGAAAGGCAATCCGCGTTGACGCAATCTCTGAGATTGATCTGTACAGGGCTGAGCCATGGGACCTCCCGCCCCTTTCGCGACTCCGAAGTCGCGATTTGGAGTGGTACTTCTTTACGACCCTCGACCACAAGTATTCTAATCGCTGCCGCACTAACCGTTCCACTATCGAGGGGTATTGGAAGACGACCGGGAAGGATCGGCCCATCCAACATCATTCTCGGAAAGTCGGCATGAAGAAAACCTTAGTTTATCATTCCGGTCGAGCACCGCGTGGTCAGCGAACCAATTGGGTCATGCACGAGTATCGTTTAGAGGATGAGAATCTTACCCGCTCAGGGATTCTGCAGGATGGCTACGTTTTATGTAGGATATTCCAAAAGAGCGGGCCTGGGCCTCAGAATGGTGCCCAGTATGGTGCGCCGTTTATAGAAGAAGAATGGGAGAGGGAAGAAGAGGAAGATGCCAAACCAGTTTCTGTGAATGTGGTTGCAGACGATGGGCTTATCGAACCTTCTGGTCAGGATTTTGTTCAGCTGGGAGATTTTTTACAGAATTCAAATTCAGGAATTCAGCATATTGATGCTTTCCCCTCAAGGTCTGCTGAGCTTGAGCTTGGTAGCCTATCAGAAGATTCATCTAATTTTGTGGAAGAAGTTTTCAAAGACCCTAATTTTTTGGCCGATAAAACTGAGGATGTAGATTTTTCTGTTCCACAGGTTAACAAATGTTCAGATACTCAATTAAATTGTGTCTCTATGCAAAGCAATGGATATGTACAGTTGGAAGATATTCTTTCTGAGGGTAACCCAAATTCTAGTTCTGATGACTCAATTCACTGCCCATCTGTGGTGGATGGTGTGTTCAAATCGGAAATCTTTCTTAAAATTCCTGATGAAGGGAACTTGCTTAATACAAATTGTGCTATTAACCAACCAGAACATCTTCAGTTGTACTCAGCTGTTGAGCATGATATGTTTCCACAACCATTTGATCCTTTGGATGATGCACCTTGGGAATACCCGTCTAATTGTATGGCTGAGGACTCAGTTTATTATGATACATTTAGTCATGATGTTCCATATTCAGAAGATGGTTTAACAGTTGAAACTTCCATGCCAACCGTGACTGAATTTGATTTTTCAGAGGATTTAATGTTATACTATGAAGCTGCTGAAGATAAGTCAAACCCATCACCTGAGGTTGTTGGAAGCGGCAGTTCATCTGGCAAGGAAGTTATTTCTGCCAGAGAGAATTTAATACAGCAGTCTTCATTAGGGAAACTAAGAACGGGTGATGGTATTTCAAGTATATTAAATGATGATCTAACTGATGCCGAACTCAAAATAGGTAGCAAGAGCAACACATTAGGGAAGCGTCTTGCCAGTATGCTTAATTCAATTTCGGCACCTCCAGCTTTTGCTGATGAAGTGACTTTGATTGGCAAAACTGCTAGGCAGACTCCTGCTGCATCACTCCATCTAACCGCCAATGTGATCCAGCTAGGAAATTTGAGAGCTGTGGATTATTATTATGCTGACAGCTGGACTTTGCAGAAGAAATCAGGGCGCATAGCTGGCAAATCAAGAAAGACAGCGCTCGGCCTTATTTATTCAACATTTCGCAGGTGCCGTTTTCCTCTGTTTTTCCTCTCTGCTGCCGTATTTGGACTGAGCTGCAAACTTGGATTCTTAGAGCTTCCGCACTGCTTAATACGGGGGTGATGAAAATGATTCTGGCGTGATCTGCGCCGTCGGATAGGCCGATCCGATTCGACGACATAATGATGGGAGGATTCTCCGTCGTCGGATTGGTGGATTCAATCTGCCGACAAATCGATAGGATTAATGTCGGCTGTTGGATCGGTGACTTCTATCCGACGACAGGGAGTTAATCGAACCGTAGGCGTAATCCGAGCAGTCTGGTGGATGATCTGGTCCAAAGATCAGAAGCTTTGAGCATATTTGGTACCTAAAGGAGAGCCTGAGCTGCAGCAGTTTACCTGAAGACTTCATTTGTCCATCTTTTATTTTATATGTGAGGATGA

Network for GWHGAAEX001023

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.14	NAM	23	148	3.70E-33

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	51.960
SRP064423	SRR2545915	Juvenile tuber	40.090
SRP108465	SRR5643513	five period of Gastrodia elata	38.790
	SRR5643514	five period of Gastrodia elata	36.950
	SRR5643515	five period of Gastrodia elata	37.860
	SRR5643524	five period of Gastrodia elata	40.160
	SRR5643525	five period of Gastrodia elata	38.690
	SRR5643528	five period of Gastrodia elata	38.600
	SRR5643658	five period of Gastrodia elata	37.040
	SRR5643659	five period of Gastrodia elata	36.870
	SRR5643660	five period of Gastrodia elata	37.520
	SRR5643661	five period of Gastrodia elata	38.860
	SRR5643662	five period of Gastrodia elata	35.370
	SRR5643663	five period of Gastrodia elata	38.120
	SRR5643664	five period of Gastrodia elata	27.980
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	54.730
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	58.520
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	47.730
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	60.960
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	59.260
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	75.150
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	60.680
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	58.090
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	51.820
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	59.410
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	49.670
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	49.670
SRP279888	Gastro	Gastrodia elata tuber	36.31
	Juven	Juvenile tuber	57.93
	Mother_Gastro	Mother tuber of Gastrodia elata	56.80
	Mother_Juven	Mother tuber of Juvenile	59.80