Detail information of GWHGAAEX001025/evm.TU.scaffold_104.42
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|672114947|ref|XP_008779219.1| | 0 | PREDICTED: uncharacterized protein LOC103698933 isoform X3 [Phoenix dactylifera] |
| Swissprot | tr|F4KBP5|CHR4_ARATH | 1.00E-06 | Protein CHROMATIN REMODELING 4 {ECO:0000303|PubMed:16547115} |
| trEMBL | tr|M0U7J2|M0U7J2_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP08820_001} |
| trEMBL | tr|M0U7J2|M0U7J2_MUSAM | 4.00E-08 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP08820_001} |
| TAIR | AT2G37520 | 1.00E-172 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000103 | 1106474 | 1135826 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001025
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF16135.4 | Jas | 384 | 448 | 3.80E-07 |
| PF16135.4 | Jas | 562 | 632 | 1.60E-23 |
| PF00628.28 | PHD | 661 | 702 | 5.20E-08 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | PHD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.840 |
| SRR2545915 | Juvenile tuber | 7.360 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 7.510 |
| SRR5643514 | five period of Gastrodia elata | 8.430 | |
| SRR5643515 | five period of Gastrodia elata | 7.880 | |
| SRR5643524 | five period of Gastrodia elata | 8.210 | |
| SRR5643525 | five period of Gastrodia elata | 8.000 | |
| SRR5643528 | five period of Gastrodia elata | 7.830 | |
| SRR5643658 | five period of Gastrodia elata | 6.900 | |
| SRR5643659 | five period of Gastrodia elata | 8.780 | |
| SRR5643660 | five period of Gastrodia elata | 8.590 | |
| SRR5643661 | five period of Gastrodia elata | 8.410 | |
| SRR5643662 | five period of Gastrodia elata | 8.110 | |
| SRR5643663 | five period of Gastrodia elata | 9.100 | |
| SRR5643664 | five period of Gastrodia elata | 9.200 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 7.470 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.520 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 7.820 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 7.070 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.840 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 8.340 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 7.210 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.900 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.980 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 7.970 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 7.830 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 7.830 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 10.36 |
| Juven | Juvenile tuber | 8.60 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 13.31 | |
| Mother_Juven | Mother tuber of Juvenile | 12.40 |