Detail information of GWHGAAEX001032/evm.TU.scaffold_104.52
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 1.00E-128 | FOG: PPR repeat |
| nr | gi|743835240|ref|XP_010935756.1| | 2.89E-157 | PREDICTED: pentatricopeptide repeat-containing protein At1g06145-like [Elaeis guineensis] |
| Swissprot | tr|Q56X05|PPR15_ARATH | 5.00E-128 | Pentatricopeptide repeat-containing protein At1g06145 |
| trEMBL | tr|F6H214|F6H214_VITVI | 2.00E-145 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB46310.1} |
| trEMBL | tr|F6H214|F6H214_VITVI | 5.00E-16 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB46310.1} |
| TAIR | AT1G06150_2 | 1.00E-128 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000103 | 1394732 | 1396706 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001032
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF12854.6 | PPR_1 | 5 | 32 | 3.10E-06 |
| PF12854.6 | PPR_1 | 35 | 63 | 4.90E-08 |
| PF13041.5 | PPR_2 | 66 | 114 | 9.60E-11 |
| PF13041.5 | PPR_2 | 168 | 214 | 5.80E-08 |
| PF01535.19 | PPR | 243 | 264 | 0.0074 |
| PF01535.19 | PPR | 309 | 336 | 0.027 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.820 |
| SRR2545915 | Juvenile tuber | 0.820 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.580 |
| SRR5643514 | five period of Gastrodia elata | 1.710 | |
| SRR5643515 | five period of Gastrodia elata | 0.810 | |
| SRR5643524 | five period of Gastrodia elata | 0.970 | |
| SRR5643525 | five period of Gastrodia elata | 0.960 | |
| SRR5643528 | five period of Gastrodia elata | 1.340 | |
| SRR5643658 | five period of Gastrodia elata | 0.470 | |
| SRR5643659 | five period of Gastrodia elata | 2.320 | |
| SRR5643660 | five period of Gastrodia elata | 2.450 | |
| SRR5643661 | five period of Gastrodia elata | 2.230 | |
| SRR5643662 | five period of Gastrodia elata | 2.590 | |
| SRR5643663 | five period of Gastrodia elata | 2.160 | |
| SRR5643664 | five period of Gastrodia elata | 1.580 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.200 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.790 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.640 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.470 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.140 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.670 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.680 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.110 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.550 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.970 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.980 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.980 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.58 |
| Juven | Juvenile tuber | 2.10 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.15 | |
| Mother_Juven | Mother tuber of Juvenile | 1.04 |