Detail information of GWHGAAEX001037/evm.TU.scaffold_104.59
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|116624929|ref|YP_827085.1| | 6.00E-13 | serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] |
| KOG | KOG1187 | 1.00E-117 | Serine/threonine protein kinase |
| nr | gi|743853268|ref|XP_010940615.1| | 1.74E-152 | PREDICTED: lysM domain receptor-like kinase 3 [Elaeis guineensis] |
| Swissprot | tr|F4IB81|LYK3_ARATH | 1.00E-41 | LysM domain receptor-like kinase 3 (Precursor) |
| trEMBL | tr|M0U786|M0U786_MUSAM | 1.00E-123 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP07750_001} |
| TAIR | AT3G57120 | 1.00E-117 | Protein kinase superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000103 | 1584850 | 1586286 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001037
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00069.24 | Pkinase | 127 | 326 | 1.40E-22 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LysM |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004672 | Molecular Function | protein kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 11.160 |
| SRR2545915 | Juvenile tuber | 13.180 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.900 |
| SRR5643514 | five period of Gastrodia elata | 9.480 | |
| SRR5643515 | five period of Gastrodia elata | 14.720 | |
| SRR5643524 | five period of Gastrodia elata | 10.460 | |
| SRR5643525 | five period of Gastrodia elata | 12.690 | |
| SRR5643528 | five period of Gastrodia elata | 13.440 | |
| SRR5643658 | five period of Gastrodia elata | 9.770 | |
| SRR5643659 | five period of Gastrodia elata | 26.060 | |
| SRR5643660 | five period of Gastrodia elata | 24.740 | |
| SRR5643661 | five period of Gastrodia elata | 25.460 | |
| SRR5643662 | five period of Gastrodia elata | 32.900 | |
| SRR5643663 | five period of Gastrodia elata | 22.550 | |
| SRR5643664 | five period of Gastrodia elata | 19.680 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 10.560 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 12.440 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.580 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.340 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 11.100 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 9.550 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 7.220 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 12.510 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 15.680 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 9.320 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 7.820 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 7.820 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 17.12 |
| Juven | Juvenile tuber | 9.04 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 31.37 | |
| Mother_Juven | Mother tuber of Juvenile | 12.28 |