Detail information of GWHGAAEX001038/evm.TU.scaffold_104.60
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|189502232|ref|YP_001957949.1| | 2.00E-15 | hypothetical protein Aasi_0849 [Candidatus Amoebophilus asiaticus 5a2] |
| KOG | KOG0167 | 0 | FOG: Armadillo/beta-catenin-like repeats |
| nr | gi|672131949|ref|XP_008789544.1| | 0 | PREDICTED: U-box domain-containing protein 12 isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q5VRH9|PUB12_ORYSJ | 0 | U-box domain-containing protein 12 |
| trEMBL | tr|F6HND8|F6HND8_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB56157.1} |
| TAIR | AT3G54850 | 0 | plant U-box 14 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000103 | 1603155 | 1612684 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001038
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04564.14 | U-box | 256 | 326 | 1.50E-22 |
| PF00514.22 | Arm | 382 | 421 | 3.50E-10 |
| PF00514.22 | Arm | 466 | 503 | 8.20E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
| Ubiquitin Family | U-box |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016567 | Biological Process | protein ubiquitination |
| GO:0004842 | Molecular Function | ubiquitin-protein transferase activity |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 22.870 |
| SRR2545915 | Juvenile tuber | 24.050 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 25.930 |
| SRR5643514 | five period of Gastrodia elata | 27.760 | |
| SRR5643515 | five period of Gastrodia elata | 25.180 | |
| SRR5643524 | five period of Gastrodia elata | 30.170 | |
| SRR5643525 | five period of Gastrodia elata | 31.980 | |
| SRR5643528 | five period of Gastrodia elata | 33.460 | |
| SRR5643658 | five period of Gastrodia elata | 35.910 | |
| SRR5643659 | five period of Gastrodia elata | 27.830 | |
| SRR5643660 | five period of Gastrodia elata | 31.960 | |
| SRR5643661 | five period of Gastrodia elata | 29.700 | |
| SRR5643662 | five period of Gastrodia elata | 29.640 | |
| SRR5643663 | five period of Gastrodia elata | 24.390 | |
| SRR5643664 | five period of Gastrodia elata | 35.750 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 27.360 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 25.700 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 29.650 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 28.560 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 29.160 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 33.960 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 26.620 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 30.950 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 27.960 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 28.190 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 31.140 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 31.140 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 34.24 |
| Juven | Juvenile tuber | 28.40 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 55.49 | |
| Mother_Juven | Mother tuber of Juvenile | 45.79 |