Detail information of GWHGAAEX001041/evm.TU.scaffold_104.64
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|261416997|ref|YP_003250680.1| | 2.00E-94 | histidyl-tRNA synthetase [Fibrobacter succinogenes subsp. succinogenes S85] |
| KOG | KOG1936 | 0 | Histidyl-tRNA synthetase |
| nr | gi|672161469|ref|XP_008800550.1| | 0 | PREDICTED: histidine--tRNA ligase, cytoplasmic-like isoform X2 [Phoenix dactylifera] |
| Swissprot | tr|P93422|SYH_ORYSJ | 2.00E-44 | Histidine--tRNA ligase |
| trEMBL | tr|J3LH75|J3LH75_ORYBR | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:OB02G39920.1} |
| TAIR | AT3G46100 | 0 | Histidyl-tRNA synthetase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000103 | 1723824 | 1807426 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001041
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module3 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13393.5 | tRNA-synt_His | 81 | 385 | 7.90E-41 |
| PF03129.19 | HGTP_anticodon | 412 | 492 | 5.20E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01892 | HARS, hisS | Aminoacyl-tRNA biosynthesis | map00970 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006427 | Biological Process | histidyl-tRNA aminoacylation |
| GO:0004821 | Molecular Function | histidine-tRNA ligase activity |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0005737 | Cellular Component | cytoplasm |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 23.440 |
| SRR2545915 | Juvenile tuber | 22.210 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 12.110 |
| SRR5643514 | five period of Gastrodia elata | 9.680 | |
| SRR5643515 | five period of Gastrodia elata | 8.800 | |
| SRR5643524 | five period of Gastrodia elata | 8.440 | |
| SRR5643525 | five period of Gastrodia elata | 16.810 | |
| SRR5643528 | five period of Gastrodia elata | 17.360 | |
| SRR5643658 | five period of Gastrodia elata | 11.290 | |
| SRR5643659 | five period of Gastrodia elata | 24.830 | |
| SRR5643660 | five period of Gastrodia elata | 26.930 | |
| SRR5643661 | five period of Gastrodia elata | 25.840 | |
| SRR5643662 | five period of Gastrodia elata | 27.650 | |
| SRR5643663 | five period of Gastrodia elata | 25.700 | |
| SRR5643664 | five period of Gastrodia elata | 28.340 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 12.150 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.170 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 12.990 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 10.980 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 8.350 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 7.090 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 10.320 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 10.110 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 11.610 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 10.770 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 10.430 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 10.430 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 43.79 |
| Juven | Juvenile tuber | 20.12 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 12.87 | |
| Mother_Juven | Mother tuber of Juvenile | 14.34 |