Detail information of GWHGAAEX001043/evm.TU.scaffold_104.66
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 3.00E-117 | FOG: PPR repeat |
| nr | gi|743834560|ref|XP_010935562.1| | 0 | PREDICTED: putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic [Elaeis guineensis] |
| Swissprot | tr|Q9SJZ3|PP169_ARATH | 9.00E-118 | Pentatricopeptide repeat-containing protein At2g22410, mitochondrial (Precursor) |
| trEMBL | tr|B8AGH8|B8AGH8_ORYSI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:EEC72346.1} |
| TAIR | AT2G22410 | 3.00E-117 | SLOW GROWTH 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000103 | 1834070 | 1835973 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001043
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 68 | 98 | 0.093 |
| PF01535.19 | PPR | 169 | 197 | 0.00021 |
| PF01535.19 | PPR | 200 | 229 | 4.00E-05 |
| PF01535.19 | PPR | 273 | 296 | 0.0014 |
| PF13041.5 | PPR_2 | 298 | 345 | 2.00E-10 |
| PF01535.19 | PPR | 374 | 398 | 0.1 |
| PF01535.19 | PPR | 445 | 467 | 0.067 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.630 |
| SRR2545915 | Juvenile tuber | 1.000 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.290 |
| SRR5643514 | five period of Gastrodia elata | 1.490 | |
| SRR5643515 | five period of Gastrodia elata | 1.200 | |
| SRR5643524 | five period of Gastrodia elata | 1.000 | |
| SRR5643525 | five period of Gastrodia elata | 0.200 | |
| SRR5643528 | five period of Gastrodia elata | 0.380 | |
| SRR5643658 | five period of Gastrodia elata | 0.250 | |
| SRR5643659 | five period of Gastrodia elata | 3.070 | |
| SRR5643660 | five period of Gastrodia elata | 2.740 | |
| SRR5643661 | five period of Gastrodia elata | 2.680 | |
| SRR5643662 | five period of Gastrodia elata | 2.480 | |
| SRR5643663 | five period of Gastrodia elata | 2.500 | |
| SRR5643664 | five period of Gastrodia elata | 1.510 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.770 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.770 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.960 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.010 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.450 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.670 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.650 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.850 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.110 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.160 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.870 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.870 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.69 |
| Juven | Juvenile tuber | 0.89 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.70 | |
| Mother_Juven | Mother tuber of Juvenile | 0.62 |