Detail information of GWHGAAEX001048/evm.TU.scaffold_104.73


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG03815.00E-26HMG box-containing protein
nrgi|743852404|ref|XP_010940378.1|5.34E-71PREDICTED: high mobility group B protein 7-like [Elaeis guineensis]
Swissprottr|Q8LDF9|HMGB7_ARATH8.00E-48High mobility group B protein 7
trEMBLtr|A5BH75|A5BH75_VITVI8.00E-66Putative uncharacterized protein {ECO:0000313|EMBL:CAN61363.1}
TAIRAT5G234205.00E-26high-mobility group box 6

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000010320279182029466+
Transcript Sequence

Network for GWHGAAEX001048

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00505.18HMG_box1061676.20E-16
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyHMG

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms2.340
SRR2545915Juvenile tuber4.050
SRP108465SRR5643513five period of Gastrodia elata22.530
SRR5643514five period of Gastrodia elata17.820
SRR5643515five period of Gastrodia elata7.470
SRR5643524five period of Gastrodia elata10.950
SRR5643525five period of Gastrodia elata1.330
SRR5643528five period of Gastrodia elata0.190
SRR5643658five period of Gastrodia elata0.580
SRR5643659five period of Gastrodia elata6.380
SRR5643660five period of Gastrodia elata5.440
SRR5643661five period of Gastrodia elata4.230
SRR5643662five period of Gastrodia elata2.980
SRR5643663five period of Gastrodia elata8.320
SRR5643664five period of Gastrodia elata2.130
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_125.040
SRR6049655Rhizomagastrodiae_C368-T10_good_125.530
SRR6049656Rhizomagastrodiae_C368-T07_good_133.820
SRR6049657Rhizomagastrodiae_C368-T07_good_119.710
SRR6049658Rhizomagastrodiae_C368-T04_good_111.550
SRR6049659Rhizomagastrodiae_C368-T04_good_15.150
SRR6049660Rhizomagastrodiae_C368-T01_good_113.980
SRR6049661Rhizomagastrodiae_C368-T04_good_117.360
SRR6049662Rhizomagastrodiae_C368-T01_good_134.750
SRR6049663Rhizomagastrodiae_C368-T01_good_118.780
SRR6049664Rhizomagastrodiae_C368-T10_good_143.430
SRR6049665Rhizomagastrodiae_C368-T10_good_143.430
SRP279888GastroGastrodia elata tuber 2.42
JuvenJuvenile tuber4.10
Mother_GastroMother tuber of Gastrodia elata 1.50
Mother_JuvenMother tuber of Juvenile 1.47