Detail information of GWHGAAEX001049/evm.TU.scaffold_104.74


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG34516.00E-32Uncharacterized conserved protein
nrgi|672135228|ref|XP_008791280.1|1.46E-37PREDICTED: general transcription factor IIH subunit 5 [Phoenix dactylifera]
trEMBLtr|J3M391|J3M391_ORYBR1.00E-35Uncharacterized protein {ECO:0000313|EnsemblPlants:OB05G10650.1}
TAIRAT1G124006.00E-32Nucleotide excision repair, TFIIH, subunit TTDA

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000010320373682045964-
Transcript Sequence

Network for GWHGAAEX001049

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF06331.11Tfb51671.30E-26
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K10845TTDA, GTF2H5, TFB5 Basal transcription factors map03022
Nucleotide excision repairmap03420

Gene Ontology

GO term OntologyName
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006289Biological Processnucleotide-excision repair
GO:0000439Cellular Componentcore TFIIH complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms37.100
SRR2545915Juvenile tuber39.450
SRP108465SRR5643513five period of Gastrodia elata25.660
SRR5643514five period of Gastrodia elata33.540
SRR5643515five period of Gastrodia elata27.060
SRR5643524five period of Gastrodia elata31.820
SRR5643525five period of Gastrodia elata28.420
SRR5643528five period of Gastrodia elata33.820
SRR5643658five period of Gastrodia elata29.960
SRR5643659five period of Gastrodia elata28.030
SRR5643660five period of Gastrodia elata26.290
SRR5643661five period of Gastrodia elata29.760
SRR5643662five period of Gastrodia elata31.580
SRR5643663five period of Gastrodia elata24.330
SRR5643664five period of Gastrodia elata31.580
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_121.970
SRR6049655Rhizomagastrodiae_C368-T10_good_121.280
SRR6049656Rhizomagastrodiae_C368-T07_good_125.110
SRR6049657Rhizomagastrodiae_C368-T07_good_120.660
SRR6049658Rhizomagastrodiae_C368-T04_good_121.930
SRR6049659Rhizomagastrodiae_C368-T04_good_120.140
SRR6049660Rhizomagastrodiae_C368-T01_good_121.610
SRR6049661Rhizomagastrodiae_C368-T04_good_124.780
SRR6049662Rhizomagastrodiae_C368-T01_good_123.840
SRR6049663Rhizomagastrodiae_C368-T01_good_121.670
SRR6049664Rhizomagastrodiae_C368-T10_good_126.350
SRR6049665Rhizomagastrodiae_C368-T10_good_126.350
SRP279888GastroGastrodia elata tuber 33.98
JuvenJuvenile tuber28.22
Mother_GastroMother tuber of Gastrodia elata 28.22
Mother_JuvenMother tuber of Juvenile 23.85