Detail information of GWHGAAEX001055/evm.TU.scaffold_104.79


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08001.00E-65FOG: Predicted E3 ubiquitin ligase
nrgi|672111903|ref|XP_008803049.1|2.16E-88PREDICTED: E3 ubiquitin-protein ligase RING1-like [Phoenix dactylifera]
Swissprottr|P0CH30|RING1_GOSHI4.00E-72E3 ubiquitin-protein ligase RING1
trEMBLtr|A5C2A6|A5C2A6_VITVI2.00E-77Putative uncharacterized protein {ECO:0000313|EMBL:CAN79596.1}
TAIRAT3G199501.00E-65RING/U-box superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000010321653022190283+
Transcript Sequence

Network for GWHGAAEX001055

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF14369.5zinc_ribbon_914482.60E-10
PF13639.5zf-RING_22042463.10E-11
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0061630Molecular Functionubiquitin protein ligase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms6.600
SRR2545915Juvenile tuber6.880
SRP108465SRR5643513five period of Gastrodia elata5.230
SRR5643514five period of Gastrodia elata5.330
SRR5643515five period of Gastrodia elata5.340
SRR5643524five period of Gastrodia elata5.170
SRR5643525five period of Gastrodia elata7.980
SRR5643528five period of Gastrodia elata9.110
SRR5643658five period of Gastrodia elata8.490
SRR5643659five period of Gastrodia elata8.340
SRR5643660five period of Gastrodia elata6.720
SRR5643661five period of Gastrodia elata8.530
SRR5643662five period of Gastrodia elata8.020
SRR5643663five period of Gastrodia elata6.750
SRR5643664five period of Gastrodia elata7.220
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_19.190
SRR6049655Rhizomagastrodiae_C368-T10_good_110.660
SRR6049656Rhizomagastrodiae_C368-T07_good_18.700
SRR6049657Rhizomagastrodiae_C368-T07_good_17.610
SRR6049658Rhizomagastrodiae_C368-T04_good_17.930
SRR6049659Rhizomagastrodiae_C368-T04_good_18.670
SRR6049660Rhizomagastrodiae_C368-T01_good_18.050
SRR6049661Rhizomagastrodiae_C368-T04_good_17.700
SRR6049662Rhizomagastrodiae_C368-T01_good_18.540
SRR6049663Rhizomagastrodiae_C368-T01_good_18.330
SRR6049664Rhizomagastrodiae_C368-T10_good_110.430
SRR6049665Rhizomagastrodiae_C368-T10_good_110.430
SRP279888GastroGastrodia elata tuber 10.36
JuvenJuvenile tuber8.17
Mother_GastroMother tuber of Gastrodia elata 10.34
Mother_JuvenMother tuber of Juvenile 9.81