Gene detail

Detail information of GWHGAAEX001066/evm.TU.scaffold_104.91

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|357407205\|ref\|YP_004919129.1\|	8.00E-99	lipid biosynthetic enzyme, related to human 24-dehydrocholesterol reductase DHCR [Methylomicrobium alcaliphilum 20Z]
KOG	KOG1262	0	FAD-binding protein DIMINUTO
nr	gi\|743852166\|ref\|XP_010940324.1\|	0	PREDICTED: delta(24)-sterol reductase-like [Elaeis guineensis]
Swissprot	tr\|Q39085\|DIM_ARATH	0	Delta(24)-sterol reductase
trEMBL	tr\|J3N2F0\|J3N2F0_ORYBR	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:OB10G16980.1}
TAIR	AT3G19820	0	cell elongation protein / DWARF1 / DIMINUTO (DIM)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000103	2368162	2375947	-

Transcript Sequence
>GWHTAAEX001066 CAGATCTGAGCCAGCTTTGGATGAATGGATAAAACTACGTCTTTGGCGATGAATGGCCGAGATTTCATCAATCCCTTATTTAACCGTACAGCAACCCTATCCTTGGTCTGAGTGGAGCTTTCCACAGCAAAAGCTCATCTTCCTTTTTTGCGGGTTTGGCGGCAGCCATTCCGTACGAGTGCGCAGCCGCCAGCGAAAATCCAAGGTCAAGCTCGAAACCGGCTACTCTTTCTTACATTTTCTTTTCAAGCAGCTCATTGATTTGAATCTTAGTGAGAAGTGGTTGCAGTTGATTTCTTCAGTGTTATATACGAAGTTCGAAGTTCATTCGACATCAGTAATGTCGAATCTTCAGGCGCCTCTCCGGCCAAAGAGGAAGAAGGACATCGTGGATTTCTTAGTCAAGTTCCGGTGGATTCTAGTTATCCTTGTCGTCCTCCCCGTTTCCTTCACCATCTACTTCCTCACCTACCTCGGCGACTTGAAGTCCGCTGTTAAATCCGAGAAGAGGCGGCAGAAGGAGCACGAAGAAAACGTCAAGAGAGTCGTGCAGCGCCTGAAGCAGAGAAACTCGAAGAAGGACGGCCTTGTATGCACAGCCAGAAAGCCGTACATTGCTGTCGGCATGCGAAACGTTGACTATAAGCGCGCCCGGCATTTCGAGGTCGACCTTGGCGCGTTCCGGAACATCCTCGAGATCGACAAGGATCGGATGGTCGCCAAGGTGGAACCCCTCGTCAACATGGGTCAAATCACGAGGGCCACCGTCCCCATGAATCTTGCCCTCGCCGTCGTGGCCGAGCTCGATGACCTCACCGTCGGCGGCCTGATCAATGGTTACGGCATAGAGGGGAGTTCCCACATACACGGCCTCTTCTCCGACACCGTCGTCGCCCTGGAGCTCGTCCTCGCCGACGGCCGCGTGGTCAGGGCGACGAAGGACAATGAGCACGCCGACCTGTTCTATGCTGTCCCATGGTCTCAAGGCACCCTCGGCCTCCTGGTCTCCGCCGAGATCAAGCTGATTTCCGTTAAGGAGTACATGAGGCTGACCTACAAGCCGGCGAGAGGAAGCCTGAGGGACCTCGCGCAGGCCTACGCCGATTCCTTTGCTCCGAGGGATGGCGATCAGTCGAGGGTCCCTGATTTTGTGGAGGGGATGATATACTCTCCGACGGAAGGTGTGTTCATGACAGGAATCTATGCTTCCAAGGACGAGGCAAGGAAGAAGGGGAGTGTAGTCAACAATCAGGGCTGGTGGTTCAAGCCATGGTTCTACCAGCATGCTCAGAGAGCCCTGGAGAAGGGCGAGTTCGTGGAGTACATTCCGACGAGGGAGTACTATCACCGGCACACGAGGTGCCTGTATTGGGAAGGGAAGCTCATTCTGCCCTTCGCCGATCAATGCTGGTTCAGGTGGCTCCTCGGTTGGTTGATGCCGCCGAAGGTGTCGCTGCTCAAGGCGACGCAGGGGGAGGCTATAAGGAATTACTATCACGACCGGCATGTGATACAGGACCTGCTGGTGCCTCTGTATAAAGTCGGGGAGGCCCTGGAATTTGTTCATCGGGAAATGGAGGTGTATCCTATATGGCTCTGTCCTCACCGGCTGTACAGGCTGCCTTTGAAGACGATGGTGTTTCCGGAGGCTGGGTTCGAGGCTCACCACCGACAGGGGGACACGAGTTATGCGCAGATGTACACGGACATCGGCGTGTACTATTCGCCGGGTCCTGTTCTTCGCGGCGAGGAGTACAGCGGGGCGGAAGCTGTGCATCGGCTGGAGCAGTGGCTGATCGAGAACGGAGGGTTCCAGCCGCAGTACGCTGTCTCAGAACTCAGTGAGAAGGACTTTTGGAGTATGTTCGATGGAGAGCTCTACGAGGAGTGCCGCAAGAAGTACGGCGCTGTGGGGACGTTCATGAGCGTCTACTACAAGTCAAAGAAGGGGAGGAAGACTGAGAAGGAAGTCAGGGATGCTGAGGCCGCCGTTCTCGAGGCTGCTGATGTGGAAGGAGCTTGAGTTCTTCCTTAGTATTTTGGGGTAGTGTTGGGGTTTGGATGCTTGAAGAGGAATAAAGGAATATTCTCTGTGGGTTTTCAGAGCGATCGCTGTTTTATTTGTTTTGAGGTTGTTTTCAGATGGTTCGGTTGTTTATGCAATTTTTAATTGTAGGATGCTTATATTGTAGTTTTTAAAACATTTAATTTTACCAGTTATTTTTTTTCTGTTTTATTACTTGCGAACGAGCACTGCGTCATGATTTCCTCTTTATTCCTTAGAGAAAATAAATTAACTTCAAATCTAGGTTAAAGTTTGTACATTAGTTCTTCTGATAATATATTAACTAAAATAGGTGGTGATTGC

Network for GWHGAAEX001066

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01565.22	FAD_binding_4	205	294	9.20E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09828	DHCR24, DWF1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Steroid biosynthesis	map00100

Gene Ontology

GO term	Ontology	Name
GO:0055114	Biological Process	oxidation-reduction process
GO:0016491	Molecular Function	oxidoreductase activity
GO:0071949	Molecular Function	FAD binding
GO:0050660	Molecular Function	flavin adenine dinucleotide binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	33.430
SRP064423	SRR2545915	Juvenile tuber	63.300
SRP108465	SRR5643513	five period of Gastrodia elata	84.810
	SRR5643514	five period of Gastrodia elata	76.310
	SRR5643515	five period of Gastrodia elata	73.670
	SRR5643524	five period of Gastrodia elata	71.480
	SRR5643525	five period of Gastrodia elata	29.410
	SRR5643528	five period of Gastrodia elata	27.960
	SRR5643658	five period of Gastrodia elata	25.010
	SRR5643659	five period of Gastrodia elata	102.480
	SRR5643660	five period of Gastrodia elata	94.570
	SRR5643661	five period of Gastrodia elata	119.280
	SRR5643662	five period of Gastrodia elata	87.520
	SRR5643663	five period of Gastrodia elata	86.300
	SRR5643664	five period of Gastrodia elata	88.490
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	79.320
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	52.960
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	97.640
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	72.060
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	47.530
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	39.140
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	69.920
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	66.360
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	97.020
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	77.870
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	111.710
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	111.710
SRP279888	Gastro	Gastrodia elata tuber	105.50
	Juven	Juvenile tuber	48.09
	Mother_Gastro	Mother tuber of Gastrodia elata	17.55
	Mother_Juven	Mother tuber of Juvenile	24.04