Gene detail

Detail information of GWHGAAEX001073/evm.TU.scaffold_104.97

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4791	2.00E-36	Uncharacterized conserved protein
nr	gi\|672112125\|ref\|XP_008804174.1\|	2.65E-72	PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q6K977\|C3H19_ORYSJ	4.00E-50	Zinc finger CCCH domain-containing protein 19
trEMBL	tr\|B9HJP7\|B9HJP7_POPTR	2.00E-56	Zinc finger family protein {ECO:0000313\|EMBL:EEE89872.2}
TAIR	AT2G02160	2.00E-36	CCCH-type zinc finger family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000103	2529313	2533164	-

Transcript Sequence
>GWHTAAEX001073 TTCTTCGATATCTGGCTGCCGCAAGTCCCGCTACAAGCGATCGCAGCGGTCGATTCAATTTTTTTTTTTGCGCGAAAACGCCTACTTTTCACACATTTTCTACCTATATTTAACATTGTAGGAGTATCACTCGCTGCACTTTGAGATATTTTCTGAGAATAATATATAGAAGTTTGCTCAATCCTCTCATCGGCGCCATTGCTCCTGCTTCCTCAACCGCCAAAGCTGATTATGGAGATTCGATTTTCGGAGGTGCAACAGGAGCTGAAACCCTAGAATTTTAATCACGAATCAGCACTCTTTTGCCACTAGATAGGCCATGAATTTCGAACTCGTACGAAGCAATCCCCGTCCCCGGAATGCGGAAGAGGGGGCCATCAAGAAGAAAACTGATTGCGTCTACTTTCTTGCCTCGCGCATGACTTGCAAGAAGGGAAGTGACTGTGGGTATCGTCACAGCGATGGTGCAAGGCTTAATCCCAAGGACTGCCGATTCTGGTTAAGTGGTAAATGCTTGAATCCAAAGTGCACTTTTCGCCATCCGCCACTTGATAGAATGACTGGAAGCCCTAGAATTACTTCAGGGCAAATTGCTGCTTCTCAAGCATCTCCTTCTGTGCAGTTACCATCGGACAATTCTTTTACTCGTAATTCAAGCAGAAAATTTATTTCTATTCACTGTTATTACTACCGAAAAGGCGCCTGCCTGAAAGGCGGAAAATGTTCTTTTATGCATGGGCCTCAGCCAGCAAGTAATCCAGTGCCAAAGTATGCTAAGAAGGGTGTTTGGGAAACCAATGGATGCAGCAATCTGCATAACTCGTCTGCCTTGAAAGCTGATAATAAAGATTGTACTGTTAAGCCAGTTAATAATCCAACGAGTAACACTAATTGTCACTTGGCAAATATCAGCAGTCATTCTCTGCCTCACAATCTTTGTGTTCAGGCTGAAGATCATCTTTTGAATGAGAGGGAGGATGGTGAAATTTTTAAGGAACCGTCTACTGAGTTCCTCAAGGACTCTTCTCTTGGTTTTGATGTTCTTGTGAATCATGATGCAAGGGATGCTGATTACTTTGAGCATAAAGATGCTTACCAAAATGGATTCATTAATCATCCTGATAAGCCTTCTACTAGATTAAACGGGATTCCAGATTTTGTGGTCAAGGAACCAAACGATGATGAATGGGATCAGCGTGGAGTTTGCTTTTCTTCTTCTGAGAAGATTTTGGATAAGCTGTTATTACTGAATGGACGGAGATTGGTGAAGAGAGTGAGGAGTCCCGAAGATTTGGACGAAACTGATCTTCGGAACCTACTTTTGAAGCAAAGGAGGTGCCATCTTCGTGAAAGCACCGCTAGCAGCCGTCTGAGAGGCAGAATAGCTCTCCCCAAGCTGCCCCCCCCAGAATTTCCCTCTAATTTCCAGAATGGGAGAGTTAGCAGACGGAGATTACGCTGGAGGCCGAGTAAGAATTCCTTTGCCAATGCAAGGCAGTCAGGCAGGCGGCAGAAAACACGAGATTCTACAAATCTTCTTGACTTTGCAGGGCCAAAAACCCTCGCAGACCTGAAAGTCGGTGCTAAATCAGATGAAAATTCTCACGCCGTATCAGCCCAGACTAATGTTTCTGCTTCCTCCCCGGAACATAATGAACCGGGCTCTTTGAAGACTGCAGCTCGGCATCAATATTCGGATGCTTCTGCTGAGTTTGATGCTCCTCAGCCGCTGTGCGCTTTTCTGCAGACGGAAAGAGAAGCCAATCCAGAAGTAAAAGCTACAGCTGAGTGCAATCCTGAGGAACTTACAGCCAAGGAAGGCAAGATTCTTGCTGATACTGAAGAGATGCCTCGTGAGAAGGAGGAAGCTGATGCGGAAGATGAAACAGAAACCAAAGATGCTGCTAAAGATGAAACAGAAACCAAATATGCTGCTGAAGATGAAACAGAAACCAAAGATGCTGCTGAAGATGAACAGATCGATTATGCTGCTCAGAGAGATGATAACTATGATGACACAGTGGACTGTGGAGATTGCAGGGCAGGAGAGATAGGAATGGACCCCATGAATGCAGATATCGATACCGATGAAGATGAGATGGACTTTGCTACGAAAATCGCCCTTATTTTCGCATAGTTATAAATGAGGAGATACGGTTTAGTTTTTGCTGACCATATTGTGTTTGGGAAAGGGTTTTCTAAGGGTTTTTCACGGGCTTTTTTTTTTTTTTTTTTTT

Network for GWHGAAEX001073

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF15663.4	zf-CCCH_3	21	79	3.20E-12

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046872	Molecular Function	metal ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.730
SRP064423	SRR2545915	Juvenile tuber	1.600
SRP108465	SRR5643513	five period of Gastrodia elata	1.040
	SRR5643514	five period of Gastrodia elata	2.360
	SRR5643515	five period of Gastrodia elata	1.430
	SRR5643524	five period of Gastrodia elata	1.790
	SRR5643525	five period of Gastrodia elata	1.690
	SRR5643528	five period of Gastrodia elata	1.750
	SRR5643658	five period of Gastrodia elata	1.110
	SRR5643659	five period of Gastrodia elata	2.330
	SRR5643660	five period of Gastrodia elata	1.640
	SRR5643661	five period of Gastrodia elata	1.990
	SRR5643662	five period of Gastrodia elata	2.750
	SRR5643663	five period of Gastrodia elata	2.460
	SRR5643664	five period of Gastrodia elata	2.900
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.120
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.180
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.250
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	1.930
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.410
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.750
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.000
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	1.350
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.390
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.970
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	2.810
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	2.810
SRP279888	Gastro	Gastrodia elata tuber	1.88
	Juven	Juvenile tuber	0.34
	Mother_Gastro	Mother tuber of Gastrodia elata	2.11
	Mother_Juven	Mother tuber of Juvenile	0.85