Detail information of GWHGAAEX001075/evm.TU.scaffold_104.100
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|428319185|ref|YP_007117067.1| | 3.00E-17 | adenylate/guanylate cyclase [Oscillatoria nigro-viridis PCC 7112] |
| KOG | KOG1601 | 3.00E-41 | GATA-4/5/6 transcription factors |
| nr | gi|743834219|ref|XP_010935473.1| | 4.69E-63 | PREDICTED: two-component response regulator ARR3-like [Elaeis guineensis] |
| Swissprot | tr|Q7G8V2|ARR15_ARATH | 8.00E-42 | Two-component response regulator ARR15 |
| trEMBL | tr|D0ABC7|D0ABC7_9ORYZ | 9.00E-59 | OO_Ba0005L10-OO_Ba0081K17.1 protein {ECO:0000313|EMBL:CBG76250.1} |
| TAIR | AT1G74890 | 3.00E-41 | response regulator 15 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000103 | 2543362 | 2545144 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001075
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00072.23 | Response_reg | 132 | 240 | 6.20E-23 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Others |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14492 | ARR-A | Plant hormone signal transduction | map04075 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0000160 | Biological Process | phosphorelay signal transduction system |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.600 |
| SRR2545915 | Juvenile tuber | 2.440 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.380 |
| SRR5643514 | five period of Gastrodia elata | 5.160 | |
| SRR5643515 | five period of Gastrodia elata | 3.850 | |
| SRR5643524 | five period of Gastrodia elata | 3.030 | |
| SRR5643525 | five period of Gastrodia elata | 0.360 | |
| SRR5643528 | five period of Gastrodia elata | 5.850 | |
| SRR5643658 | five period of Gastrodia elata | 1.120 | |
| SRR5643659 | five period of Gastrodia elata | 9.810 | |
| SRR5643660 | five period of Gastrodia elata | 10.550 | |
| SRR5643661 | five period of Gastrodia elata | 5.730 | |
| SRR5643662 | five period of Gastrodia elata | 3.280 | |
| SRR5643663 | five period of Gastrodia elata | 6.570 | |
| SRR5643664 | five period of Gastrodia elata | 6.450 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.850 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.690 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.280 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.150 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.720 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.150 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 14.300 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.330 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 11.790 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 13.680 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.920 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.920 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 9.11 |
| Juven | Juvenile tuber | 1.82 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.46 | |
| Mother_Juven | Mother tuber of Juvenile | 0.98 |