Detail information of GWHGAAEX001077/evm.TU.scaffold_104.102


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|371721820|gb|AEX55233.1|2.69E-27cold-regulated gibberellin-regulated protein 1 LTCOR12 [Allium sativum]
Swissprottr|Q93X17|SNAK2_SOLTU4.00E-25Snakin-2 (Precursor)
trEMBLtr|H2CLW9|H2CLW9_ALLSA1.00E-27Cold-regulated gibberellin-regulated protein 1 LTCOR12 {ECO:0000313|EMBL:AEX55233.1}
TAIRAT4G096002.00E-22GAST1 protein homolog 3

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000010326385332640187+
Transcript Sequence

Network for GWHGAAEX001077

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02704.13GASA511103.70E-19
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms17.410
SRR2545915Juvenile tuber42.670
SRP108465SRR5643513five period of Gastrodia elata83.570
SRR5643514five period of Gastrodia elata45.850
SRR5643515five period of Gastrodia elata78.250
SRR5643524five period of Gastrodia elata34.800
SRR5643525five period of Gastrodia elata121.520
SRR5643528five period of Gastrodia elata47.460
SRR5643658five period of Gastrodia elata104.970
SRR5643659five period of Gastrodia elata89.470
SRR5643660five period of Gastrodia elata92.230
SRR5643661five period of Gastrodia elata76.420
SRR5643662five period of Gastrodia elata44.950
SRR5643663five period of Gastrodia elata51.300
SRR5643664five period of Gastrodia elata85.360
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_158.020
SRR6049655Rhizomagastrodiae_C368-T10_good_167.800
SRR6049656Rhizomagastrodiae_C368-T07_good_192.700
SRR6049657Rhizomagastrodiae_C368-T07_good_138.510
SRR6049658Rhizomagastrodiae_C368-T04_good_146.300
SRR6049659Rhizomagastrodiae_C368-T04_good_140.680
SRR6049660Rhizomagastrodiae_C368-T01_good_144.760
SRR6049661Rhizomagastrodiae_C368-T04_good_134.870
SRR6049662Rhizomagastrodiae_C368-T01_good_167.770
SRR6049663Rhizomagastrodiae_C368-T01_good_191.450
SRR6049664Rhizomagastrodiae_C368-T10_good_1111.360
SRR6049665Rhizomagastrodiae_C368-T10_good_1111.360
SRP279888GastroGastrodia elata tuber 56.67
JuvenJuvenile tuber9.13
Mother_GastroMother tuber of Gastrodia elata 61.62
Mother_JuvenMother tuber of Juvenile 14.06